IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Positions in the sequence: limits from the first nucleotide of D-REGION to the last nucleotide.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence (D-REGION)	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence (D-REGION)
IGHD1	IGHD1-1	IGHD1-1*01	ORF							BAC9_6		DQ400445	[1]	(1)		181257-181277
	IGHD1-2	IGHD1-2*01	F							BAC9_6		DQ400445	[1]			189019-189029
	IGHD1-2	IGHD1-2*02	F		+	+				DH3		AF161289	[2]			69-79
	IGHD1-3	IGHD1-3*01	F							BAC9_6		DQ400445	[1]			189882-189894
	IGHD1-3	IGHD1-3*02	F		+	+				DH2		AF161288	[2]			69-81
	IGHD1-4	IGHD1-4*01	F							BAC9_6		DQ400445	[1]			190813-190826
	IGHD1-5	IGHD1-5*01	F							BAC9_6		DQ400445	[1]			192925-192934
	IGHD1-6	IGHD1-6*01	F							BAC9_6		DQ400445	[1]			196844-196862
	IGHD1-6	IGHD1-6*02	F		+	+				DH1		AF161287	[2]			69-87
IGHD2	IGHD2-1	IGHD2-1*01	(F)		+	+				DH		AF068137	[3]		~VDJ	4029-4040

~VDJ: VDJ genomic DNA rearranged in the locus.

IMGT notes:

(1) ORF because of non canonical RS

IMGT references:

[1] Bengtén E. et al., Immunogenetics., 58, 831-844 (2006). PMID:16941126
[2] Hayman J.R. et al., J. Immunol., 164, 1916-1924 (2000). PMID:10657641
[3] Ghaffari S.H. et al., J. Immunol., 162, 1519-1529 (1999). PMID:9973409

See also (IMGT Scientific chart):

Created:: 01/04/2010
Last updated:: 22/09/2023
Authors:: Nathalie Bosc & Amandine Lacan

IMGT Repertoire (IG and TR)

Gene table: channel catfish (Ictalurus punctatus) IGHD