Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Channel catfish (Ictalurus punctatus) genes are designated by a number for the subgroup, following by the letter S and a number.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence (V-REGION) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (V-REGION)
IGHV1 IGHV1-1 IGHV1-1*01 F BAC9_6 DQ400445 [1] 182590-182878
IGHV1-23 IGHV1-23*01 F BAC9_6 DQ400445 [1] 104337-104631
IGHV1S1 IGHV1S1*01 F VH1.1 U09719 [2] 436-730
IGHV1S2 IGHV1S2*01 F VH1 AF068137 [3] 550-844
IGHV1S3 IGHV1S3*01 (F) + + VDJ AF068137 [3] ~VDJ 550-844
IGHV1S4 IGHV1S4*01 (F) + + NG70 M27230 [4] #c 110-403
IGHV1S5 IGHV1S5*01 (F) + + NG64 M58673 [5] #c 104-397
IGHV1S6 IGHV1S6*01 (F) + + U67437 [6] #c 49-342
IGHV1S7 IGHV1S7*01 (F) + + U67439 [6] (1) #c 1-289
IGHV1S8 IGHV1S8*01 (F) + + 1.rh6 AF161275 [7] (1) #c 1-228
IGHV1S9 IGHV1S9*01 (F) + + 1.rh16 AF161276 [7] (1) #c 1-228
IGHV1S10 IGHV1S10*01 (F) + + 1.rh17 AF161278 [7] (1) #c 1-222
IGHV2 IGHV2-31 IGHV2-31*01 P BAC9_6 DQ400445 [1] (2) 46896-47182
IGHV2-6 IGHV2-6*01 F BAC9_6 DQ400445 [1] 166355-166644
IGHV2S1 IGHV2S1*01 P VH2.1 U09720 [2] (3) 322-609
IGHV2S2 IGHV2S2*01 (F) + + NG41 M58671 [5] #c 31-321
IGHV2S3 IGHV2S3*01 (F) + + NG22 M58670 [5] #c 75-365
IGHV2S4 IGHV2S4*01 (F) + + NG77 M58675 [5] #c 66-356
IGHV2S5 IGHV2S5*01 (F) + + U67441 [6] #c 34-324
IGHV2S6 IGHV2S6*01 (F) + + 2.rh12 AF161279 [7] (1) #c 1-225
IGHV2S7 IGHV2S7*01 (F) + + 6D05AVH2 AY238359 [8] #c 61-351
IGHV3 IGHV3-13 IGHV3-13*01 F BAC9_6 DQ400445 [1] 133967-134259
IGHV3-17 IGHV3-17*01 F BAC9_6 DQ400445 [1] 122618-122915
IGHV3-29 IGHV3-29*01 F BAC9_6 DQ400445 [1] 53752-54049
IGHV3-3 IGHV3-3*01 F BAC9_6 DQ400445 [1] 175520-175817
IGHV3-33 IGHV3-33*01 F BAC9_6 DQ400445 [1] 39035-39329
IGHV3-37 IGHV3-37*01 F BAC9_6 DQ400445 [1] 27723-28020
IGHV3-9 IGHV3-9*01 P BAC9_6 DQ400445 [1] (4) 145516-145813
IGHV3S1 IGHV3S1*01 F VH3.1 U09721 [2] 388-679
IGHV3S2 IGHV3S2*01 F VH3 AF068137 [3] 550-844
IGHV3S4 IGHV3S4*01 (F) + + NG21 M58669 [5] #c 45-341
IGHV3S5 IGHV3S5*01 (F) + + U67442 [6] (1) #c 1-265
IGHV3S7 IGHV3S7*01 (F) + + 3.rh12 AF161273 [7] (1) #c 1-225
IGHV3S8 IGHV3S8*01 (F) + + 3.rh11 AF161274 [7] (1) #c 1-231
IGHV3S10 IGHV3S10*01 (F) + + 6F03AVH3 AY238360 [8] #c 99-395
IGHV4 IGHV4-16 IGHV4-16*01 P BAC9_6 DQ400445 [1] (5) 125004-125299
IGHV4-28 IGHV4-28*01 P BAC9_6 DQ400445 [1] (6) 55084-55377
IGHV4-36 IGHV4-36*01 P BAC9_6 DQ400445 [1] (5) 30111-30406
IGHV4-8 IGHV4-8*01 P BAC9_6 DQ400445 [1] (6) 146847-147140
IGHV4S1 IGHV4S1*01 F VH4.1 U09722 [2] 293-593
IGHV4S3 IGHV4S3*01 (F) + + U67443 [6] (1) #c 1-270
IGHV5 IGHV5-14 IGHV5-14*01 P BAC9_6 DQ400445 [1] (7) 131271-131595
IGHV5-34 IGHV5-34*01 P BAC9_6 DQ400445 [1] (7) 36357-36681
IGHV5-42 IGHV5-42*01 P BAC9_6 DQ400445 [1] (3) 5424-5729
IGHV5-5 IGHV5-5*01 F BAC9_6 DQ400445 [1] 169354-169657
IGHV5S1 IGHV5S1*01 P VH5.1 U09723 [2] (3) 258-602
IGHV5S2 IGHV5S2*01 (F) + + NG66 M58674 [5] #c 70-375
IGHV5S3 IGHV5S3*01 (F) + + U67444 [6] (1) #c 1-270
IGHV5S4 IGHV5S4*01 (F) + + 5.rh8 AF161281 [7] (1) #c 1-243
IGHV5S5 IGHV5S5*01 (F) + + 6A10AVH5 AY238361 [8] #c 86-391
IGHV6 IGHV6-11 IGHV6-11*01 P BAC9_6 DQ400445 [1] (6) 138737-139022
IGHV6-12 IGHV6-12*01 ORF BAC9_6 DQ400445 [1] (8) 137088-137390
IGHV6-19 IGHV6-19*01 F BAC9_6 DQ400445 [1] 112960-113260
IGHV6-21 IGHV6-21*01 ORF BAC9_6 DQ400445 [1] (9) 107391-107688
IGHV6-32 IGHV6-32*01 P BAC9_6 DQ400445 [1] (10) 45252-45552
IGHV6-39 IGHV6-39*01 F BAC9_6 DQ400445 [1] 19182-19482
IGHV6-41 IGHV6-41*01 P BAC9_6 DQ400445 [1] (3) 8977-9273
IGHV6S1 IGHV6S1*01 F VH6.1 U09724 [2] 348-648
IGHV6S2 IGHV6S2*01 (F) + + M64400 [9] #c 49-348
IGHV6S3 IGHV6S3*01 (F) + + U67445 [6] (1) #c 1-270
IGHV6S4 IGHV6S4*01 (F) + + 6.rh11 AF161271 [7] (1) #c 1-237
IGHV6S5 IGHV6S5*01 (F) + + 6.rh14 AF161280 [7] (1) #c 1-234
IGHV6S6 IGHV6S6*01 (F) + + 2G12AVH6 AY238362 [8] #c 70-369
IGHV7 IGHV7-10 IGHV7-10*01 F BAC9_6 DQ400445 [1] 141443-141741
IGHV7-15 IGHV7-15*01 F BAC9_6 DQ400445 [1] 128970-129268
IGHV7-18 IGHV7-18*01 ORF BAC9_6 DQ400445 [1] (11) 117747-118046
IGHV7-25 IGHV7-25*01 P BAC9_6 DQ400445 [1] (12) 86913-87181
IGHV7-30 IGHV7-30*01 F BAC9_6 DQ400445 [1] 49583-49881
IGHV7-35 IGHV7-35*01 F BAC9_6 DQ400445 [1] 34054-34352
IGHV7-38 IGHV7-38*01 ORF BAC9_6 DQ400445 [1] (11) 23974-24273
IGHV7-43 IGHV7-43*01 F BAC9_6 DQ400445 [1] 2117-2415
IGHV7S1 IGHV7S1*01 P VH7.1 U34412 [10] (3) 303-594
IGHV7S2 IGHV7S2*01 (F) + + cVH7c U34411 [10] #c 9-302
IGHV7S3 IGHV7S3*01 (F) + + cVH7a U34410 [10] #c 9-305
IGHV7S4 IGHV7S4*01 (F) + + U67446 [6] #c 9-305
IGHV7S5 IGHV7S5*01 (F) + + 3B06AVH7 AY238363 [8] #c 111-407
IGHV7S6 IGHV7S6*01 (F) + + 1C09AVH7 AY238364 [8] #c 112-408
IGHV7S7 IGHV7S7*01 (F) + + VH7E AY238375 [8] #c 9-305
IGHV8 IGHV8S1 IGHV8S1*01 F VH8.1 AY238377 [8] (13) 255-555
IGHV8S2 IGHV8S2*01 (F) + + 3G01AVH8 AY238365 [8] #c 93-392
IGHV8S3 IGHV8S3*01 (F) + + 3H01AVH8 AY238366 [8] #c 91-390
IGHV8S4 IGHV8S4*01 (F) + + VH8_A1 AY238376 [8] #c 9-308
IGHV9 IGHV9-20 IGHV9-20*01 F BAC9_6 DQ400445 [1] 110429-110729
IGHV9-40 IGHV9-40*01 P BAC9_6 DQ400445 [1] (4) 12179-12473
IGHV9S1 IGHV9S1*01 F VH9.1 AY238378 [8] 276-570
IGHV9S2 IGHV9S2*01 (F) + + 2D04AVH9 AY238367 [8] #c 81-374
IGHV9S3 IGHV9S3*01 (F) + + 1G11AVH9 AY238368 [8] #c 81-374
IGHV10 IGHV10-24 IGHV10-24*01 P BAC9_6 DQ400445 [1] (7) 88487-88757
IGHV10S1 IGHV10S1*01 P VH10.1 AY238379 [8] (14) 291-574
IGHV10S2 IGHV10S2*01 (F) + + 2G01AVH10 AY238369 [8] #c 126-407
IGHV10S3 IGHV10S3*01 (F) + + 1G07AVH10 AY238370 [8] #c 52-333
IGHV11 IGHV11-2 IGHV11-2*01 F BAC9_6 DQ400445 [1] 179867-180160
IGHV11-22 IGHV11-22*01 F BAC9_6 DQ400445 [1] 105409-105702
IGHV11S1 IGHV11S1*01 P VH11.1 AY238380 [8] (3) 332-617
IGHV12 IGHV12-27 IGHV12-27*01 F BAC9_6 DQ400445 [1] 68743-69034
IGHV12-7 IGHV12-7*01 F BAC9_6 DQ400445 [1] 160689-160980
IGHV12S1 IGHV12S1*01 F VH12.1 AY238381 [8] 359-650
IGHV12S2 IGHV12S2*01 (F) + + 2G09AVH12 AY238373 [8] #c 83-373
IGHV13 IGHV13-26 IGHV13-26*01 P BAC9_6 DQ400445 [1] (15) 85973-86268
IGHV13S1 IGHV13S1*01 P VH13.1 AY238382 [8] (3) 273-567
IGHV13S2 IGHV13S2*01 (P) VH13 AY238374 [8] (4) #c 81-374
IGHV14 IGHV14-4 IGHV14-4*01 F BAC9_6 DQ400445 [1] 173805-174109

#c: rearranged cDNA
~VDJ: VDJ genomic DNA rearranged in the locus.

IMGT notes:
  1. (1) Don't affect functionality but V-REGION is partial: FR1-IMGT partial in 5'.
  2. (2) Pseudogene because of STOP-CODON in V-REGION and no 2nd-CYS.
  3. (3) Pseudogene because of frameshift(s) in V-REGION.
  4. (4) Pseudogene because of STOP-CODON in V-REGION.
  5. (5) Pseudogene because of frameshift in V-REGION and no INIT-CODON.
  6. (6) Pseudogene because of frameshift in V-REGION and no 2nd-CYS.
  7. (7) Pseudogene because of a STOP-CODON and some frameshifts in V-REGION.
  8. (8) ORF because of non canonical V-HEPTAMER.
  9. (9) ORF because no 1st-CYS and no 2nd-CYS are missing.
  10. (10) Pseudogene because of STOP-CODONs in V-REGION.
  11. (11) ORF because of a mutation in DONOR-SPLICE.
  12. (12) Pseudogene because of STOP-CODON in V-REGION and no CDR2-IGMT.
  13. (13) Functional but no V-NONAMER.
  14. (14) Pseudogene because of frameshift in V-REGION and no ACCEPTOR-SPLICE.
IMGT references:
  1. [1] Bengtén E. et al., Immunogenetics, 58, 831-844 (2006). PMID:16941126
  2. [2] Ventura-Holman T. et al., Mol. Immunol., 31, 823-832 (1994). PMID:8047073
  3. [3] Ghaffari S.H. et al., J. Immunol., 162, 1519-1529 (1999). PMID:9973409
  4. [4] Ghaffari S.H. et al., J. Immunol., 143, 2730-2739 (1989). PMID:2507636
  5. [5] Ghaffari S.H. et al., J. Immunol., 146, 1037-1046 (1991). PMID:1988492
  6. [6] Wilson M. et al., Proc. Natl. Acad. Sci. U.S.A., 94, 4593-4597 (1997). PMID:9114035
  7. [7] Hayman J.R. et al., J. Immunol., 164, 1916-1924 (2000). PMID:10657641
  8. [8] Yang F. et al., Mol. Immunol., 40, 247-260 (2003). PMID:12943797
  9. [9] Warr G.W. et al., Eur. J. Immunol., 18, 393-397 (1991). PMID:1772882
  10. [10] Ventura-Holman T. et al., Eur. J. Immunogenet., 23, 7-14 (1996). PMID:8834918
Created:
01/04/2010
Last updated:
29/06/2011
Authors:
Sylvaine Artero, Nathalie Bosc, Amandine Lacan