IMGT Repertoire (IG and TR)

Gene table: channel catfish (Ictalurus punctatus) IGIC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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See Correspondence between nomenclatures: Teleostei IGIC.

IMGT gene name IMGT allele name Fct T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIC1S1 IGIC1S1*01 F PG3 L25532 [1] c (st)
IGIC1S2 IGIC1S2*01 F PG5 L25534 [1] c (st)
IGIC1S3 IGIC1S3*01 F PG1 L25530 [1] c (st)
IGIC1S4 IGIC1S4*01 F PG2 L25531 [1] c (st)
IGIC1S5 IGIC1S5*01 (F) PG4 L25533 [1] c
IGIC1S6 IGIC1S6*01 F PG6 L25535 [1] c (st)
IGIC1S7 IGIC1S7*01 F PG7 L25536 [1] c (st)
IGIC1S8 IGIC1S8*01 F PG8 L25537 [1] c (st)
IGIC1S9 IGIC1S9*01 F PG9 L25538 [1] c (st)
IGIC1S10 IGIC1S10*01 (F) PG26 L25539 [1] c
IGIC1S11 IGIC1S11*01 (F) PG27 L25540 [1] c
IGIC1S12 IGIC1S12*01 F LPG15 AY165787 [3]
IGIC1S13 IGIC1S13*01 F LPG5 AY165789 [3]
IGIC1S14 IGIC1S14*01 F LPG16 AY165791 [3]
IGIC3S1 IGIC3S1*01 F FWS15 U25699 [2] c (st)
IGIC3S2 IGIC3S2*01 (F) PF17 U25704 [2] c
IGIC3S3 IGIC3S3*01 (F) PF8 U25705 [2] c
IGIC3S4 IGIC3S4*01 F FWS2 U25700 [2] c (st)
IGIC3S5 IGIC3S5*01 F FWS20 U25701 [2] c (st)
IGIC3S6 IGIC3S6*01 (F) PF12 U25703 [2] c
IGIC3S7 IGIC3S7*01 P (1) FWS26 U25702 [2] c (st)

c: cDNA sequence.
(st): sterile transcript.

IMGT notes:
  1. (1) In frame STOP-CODON in C-REGION.
IMGT references:
  1. [1] Ghaffari S.H. and Lobb C.J., J. Immunol., 151, 6900-6912 (1993). PMID:8258698
  2. [2] Ghaffari S.H. and Lobb C.J., J. Immunol., 159, 250-258 (1997). PMID:9200461
  3. [3] Jones J.C. et al., Unpublished (2003).
Last updated:
Sylvaine Artero, Nathalie Bosc