IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

See Correspondence between nomenclatures: Teleostei IGIC.

IMGT gene name	IMGT allele name	Fct	T		Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	T		Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain			Clone names	Accession numbers	Positions in the sequence
	IGIC1S1	IGIC1S1*01	F								PG3		L25532	[1]	c (st)
	IGIC1S2	IGIC1S2*01	F								PG5		L25534	[1]	c (st)
	IGIC1S3	IGIC1S3*01	F								PG1		L25530	[1]	c (st)
	IGIC1S4	IGIC1S4*01	F								PG2		L25531	[1]	c (st)
	IGIC1S5	IGIC1S5*01	(F)								PG4		L25533	[1]	c
	IGIC1S6	IGIC1S6*01	F								PG6		L25535	[1]	c (st)
	IGIC1S7	IGIC1S7*01	F								PG7		L25536	[1]	c (st)
	IGIC1S8	IGIC1S8*01	F								PG8		L25537	[1]	c (st)
	IGIC1S9	IGIC1S9*01	F								PG9		L25538	[1]	c (st)
	IGIC1S10	IGIC1S10*01	(F)								PG26		L25539	[1]	c
	IGIC1S11	IGIC1S11*01	(F)								PG27		L25540	[1]	c
	IGIC1S12	IGIC1S12*01	F								LPG15		AY165787	[3]
	IGIC1S13	IGIC1S13*01	F								LPG5		AY165789	[3]
	IGIC1S14	IGIC1S14*01	F								LPG16		AY165791	[3]
	IGIC3S1	IGIC3S1*01	F								FWS15		U25699	[2]	c (st)
	IGIC3S2	IGIC3S2*01	(F)								PF17		U25704	[2]	c
	IGIC3S3	IGIC3S3*01	(F)								PF8		U25705	[2]	c
	IGIC3S4	IGIC3S4*01	F								FWS2		U25700	[2]	c (st)
	IGIC3S5	IGIC3S5*01	F								FWS20		U25701	[2]	c (st)
	IGIC3S6	IGIC3S6*01	(F)								PF12		U25703	[2]	c
	IGIC3S7	IGIC3S7*01	P	(1)							FWS26		U25702	[2]	c (st)

c: cDNA sequence.
(st): sterile transcript.

IMGT notes:

(1) In frame STOP-CODON in C-REGION.

IMGT references:

[1] Ghaffari S.H. and Lobb C.J., J. Immunol., 151, 6900-6912 (1993). PMID:8258698
[2] Ghaffari S.H. and Lobb C.J., J. Immunol., 159, 250-258 (1997). PMID:9200461
[3] Jones J.C. et al., Unpublished (2003).

See also (IMGT Scientific chart):

Created:: 14/09/1999
Last updated:: 22/09/2023
Authors:: Sylvaine Artero, Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: channel catfish (Ictalurus punctatus) IGIC