IMGT Repertoire (IG and TR)

Gene table: mandarin fish (Siniperca chuatsi) IGIC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Teleostei light chain type is Ig-Light-Iota (IGI).

IMGT gene name IMGT allele name Fct T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIC1S1 IGIC1S1*01 (F) LE-12 AF454468 [1] c
IGIC1S2 IGIC1S2*01 (F) LE-15 AF454469 [1] c
IGIC1S3 IGIC1S3*01 (F) LE-18 AF454470 [1] c
IGIC1S4 IGIC1S4*01 (F) MfCL003 AY013293 [1] c
IGIC1S5 IGIC1S5*01 (F) MfCL015 AY013294 [1] c

c: cDNA sequence.

IMGT references:
  1. [1] Zhang Y.A. et al., Vet. Immunol. Immunopathol., 95, 81-90 (2003). PMID:12969639
Last updated:
Nathalie Bosc