IMGT Repertoire (IG and TR)

Gene table: mandarin fish (Siniperca chuatsi) IGIV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Teleostei light chain type is Ig-Light-Iota (IGI).

The Chinese perch (Siniperca chuatsi) IGIV genes and alleles have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIV1 IGIV1S1 IGIV1S1*01 (F) + + LE-12 AF454468 [1] #c
IGIV1S2 IGIV1S2*01 (F) + + LE-15 AF454469 [1] #c
IGIV1S3 IGIV1S3*01 (F) + + LE-18 AF454470 [1] #c
IGIV1S4 IGIV1S4*01 (F) + + MfVL001 AY013291 [1] (1) #c
IGIV1S5 IGIV1S5*01 (F) + + MfVL015 AY013292 [1] (1) #c
IGIV1S6 IGIV1S6*01 (F) + + MfCL003 AY013293 [1] (2) #c
IGIV1S7 IGIV1S7*01 (F) + + MfCL015 AY013294 [1] (2) #c

#c: rearranged cDNA.

IMGT notes:
  1. (1) Partial V-REGION: partial CDR3-IMGT in 3' end.
  2. (2) Partial V-REGION: AA 1 to 91 are missing (no FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT and partial FR3-IMGT).
IMGT references:
  1. [1] Zhang Y.A. et al., Vet. Immunol. Immunopathol., 95, 81-90 (2003). PMID:12969639
Last updated:
Nathalie Bosc