IMGT Repertoire (IG and TR)


Gene table: crab-eating macaque (Macaca fascicularis) IGHV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal localization R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Clone names Accession numbers Positions in the sequence (L-V-GENE-UNIT) Secondary accession numbers Clone names Accession numbers Positions in the sequence (L-V-GENE-UNIT)
IGHV1 IGHV1-1 IGHV1-1*01 F 7q BK009022 [1] 1-476
IGHV1S1 IGHV1S1*01 F 7q BK009031 [1] 1-476
IGHV1S2 IGHV1S2*01 F BK008916 [1] 1-476
IGHV1S3 IGHV1S3*01 P (1) BK008922 [1] 50-524
IGHV1S4 IGHV1S4*01 P (2) BK008924 [1] 1-479
IGHV1S5 IGHV1S5*01 P (3) BK008927 [1] 1-476
IGHV1S6 IGHV1S6*01 P (4) BK008936 [1] 1-474
IGHV1S7 IGHV1S7*01 P (3) BK008951 [1] 1-482
IGHV1S8 IGHV1S8*01 P (2) BK008952 [1] 1-477
IGHV1S9 IGHV1S9*01 F BK008956 [1] 1-478
IGHV1S10 IGHV1S10*01 F BK008958 [1] 1-478
IGHV1S11 IGHV1S11*01 P (5) BK008969 [1] 1-478
IGHV1S12 IGHV1S12*01 P (6) BK008929 [1]
IGHV1S13 IGHV1S13*01 P (2) BK008959 [1]
IGHV1S14 IGHV1S14*01 P (5) BK008967 [1] 1-478
IGHV2 IGHV2-1 IGHV2-1*01 F BK008919 [1] 1-483
IGHV2S1 IGHV2S1*01 F 7q BK009028 [1] 1-483
IGHV2S2 IGHV2S2*01 F 7q BK009049 [1] 1-483
IGHV2S3 IGHV2S3*01 P (3) BK008921 [1]
IGHV3 IGHV3-5 IGHV3-5*01 ORF (7) 7q BK009016 [1] 1-501
IGHV3-6 IGHV3-6*01 F 7q BK009018 [1] 1-501
IGHV3-7 IGHV3-7*01 F 7q BK009019 [1] 1-487
IGHV3-9 IGHV3-9*01 F 7q BK009024 [1] 1-495
IGHV3-10 IGHV3-10*01 F 7q BK009026 [1] 1-495
IGHV3-11 IGHV3-11*01 F 7q BK009027 [1] 1-489
IGHV3-12 IGHV3-12*01 F 7q BK009033 [1] 1-504
IGHV3-14 IGHV3-14*01 F 7q BK009035 [1] 1-495
IGHV3-20 IGHV3-20*01 F 7q BK009047 [1]
IGHV3-21 IGHV3-21*01 ORF (8) 7q BK009048 [1] 1-489
IGHV3-22 IGHV3-22*01 F 7q BK009051 [1] 1-497
IGHV3-24 IGHV3-24*01 P (9) 7q BK009054 [1] 2-496
IGHV3S1 IGHV3S1*01 P (10) 7q BK009006 [1] 1-493
IGHV3S2 IGHV3S2*01 P (10) 7q BK009010 [1] 1-486
IGHV3S3 IGHV3S3*01 P (11) 7q BK009014 [1] 1-495
IGHV3S4 IGHV3S4*01 F 7q BK009015 [1] 1-501
IGHV3S5 IGHV3S5*01 F 7q BK009020 [1] 1-492
IGHV3S6 IGHV3S6*01 P (12) 7q BK009036 [1]
IGHV3S7 IGHV3S7*01 P (2) 7q BK009037 [1]
IGHV3S8 IGHV3S8*01 P (3) 7q BK009039 [1]
IGHV3S9 IGHV3S9*01 ORF (13) 7q BK009041 [1] 1-494
IGHV3S10 IGHV3S10*01 F 7q BK009043 [1]
IGHV3S11 IGHV3S11*01 F 7q BK009044 [1] 1-501
IGHV3S12 IGHV3S12*01 P (14) 7q BK009046 [1]
IGHV3S13 IGHV3S13*01 P (15) 7q BK009052 [1]
IGHV3S14 IGHV3S14*01 P (16) BK008914 [1] 1-489
IGHV3S15 IGHV3S15*01 F BK008917 [1]
IGHV3S16 IGHV3S16*01 F BK008918 [1] 1-495
IGHV3S17 IGHV3S17*01 F BK008923 [1] 1-492
IGHV3S18 IGHV3S18*01 F BK008928 [1] 1-494
IGHV3S19 IGHV3S19*01 F BK008930 [1] 1-495
IGHV3S20 IGHV3S20*01 F BK008931 [1] 1-501
IGHV3S21 IGHV3S21*01 F BK008932 [1]
IGHV3S22 IGHV3S22*01 F BK008933 [1] 1-512
IGHV3S23 IGHV3S23*01 F BK008934 [1] 1-495
IGHV3S24 IGHV3S24*01 P (17) BK008939 [1]
IGHV3S25 IGHV3S25*01 F BK008941 [1] 1-495
IGHV3S26 IGHV3S26*01 F BK008944 [1] 1-495
IGHV3S27 IGHV3S27*01 P (18) BK008963 [1] 1-508
IGHV3S28 IGHV3S28*01 P (6) BK008974 [1]
IGHV3S29 IGHV3S29*01 F BK008975 [1] 1-494
IGHV3S30 IGHV3S30*01 F BK008976 [1] 1-501
IGHV3S31 IGHV3S31*01 P (10) BK008978 [1]
IGHV3S32 IGHV3S32*01 F BK008980 [1] 1-495
IGHV3S33 IGHV3S33*01 P (19) BK008981 [1] 1-497
IGHV3S34 IGHV3S34*01 P (20) BK008984 [1]
IGHV3S35 IGHV3S35*01 F BK008987 [1] 1-490
IGHV3S36 IGHV3S36*01 P (21) BK008989 [1]
IGHV3S37 IGHV3S37*01 P (10) BK008992 [1]
IGHV3S38 IGHV3S38*01 P (22) BK008993 [1] 1-504
IGHV3S39 IGHV3S39*01 P (23) BK008994 [1] 1-502
IGHV3S40 IGHV3S40*01 F BK008995 [1] 1-501
IGHV3S41 IGHV3S41*01 F BK008996 [1] 1-494
IGHV3S42 IGHV3S42*01 P (24) BK008997 [1] 1-495
IGHV3S43 IGHV3S43*01 F BK008998 [1] 1-494
IGHV3S44 IGHV3S44*01 F BK009000 [1] 1-492
IGHV3S45 IGHV3S45*01 F BK009002 [1] 1-501
IGHV3S46 IGHV3S46*01 F BK009004 [1]
IGHV3S47 IGHV3S47*01 P (10) BK009005 [1]
IGHV3S48 IGHV3S48*01 ORF (13) 7q BK009060 [1] 1-494
IGHV3S49 IGHV3S49*01 P (25) BK008915 [1]
IGHV3S50 IGHV3S50*01 P (26) BK008942 [1] 1-499
IGHV3S51 IGHV3S51*01 P (14) BK008962 [1]
IGHV3S52 IGHV3S52*01 P (27) BK008985 [1]
IGHV3S53 IGHV3S53*01 P (18) BK008986 [1] 1-484
IGHV4 IGHV4-2 IGHV4-2*01 F 7q BK009029 [1] 1-475
IGHV4S1 IGHV4S1*01 P (28) 7q BK009009 [1]
IGHV4S2 IGHV4S2*01 ORF (8) 7q BK009034 [1] IGHV(II)S16*01 BK009003 [1]
IGHV4S2-2 IGHV4S2-2*01 P (3) 7q BK009050 [1]
IGHV4S4 IGHV4S4*01 P (3) 7q BK009055 [1] 1-479
IGHV4S5 IGHV4S5*01 F BK008911 [1]
IGHV4S6 IGHV4S6*01 F BK008920 [1] 1-475
IGHV4S7 IGHV4S7*01 F BK008938 [1] 1-478
IGHV4S8 IGHV4S8*01 P (29) BK008940 [1]
IGHV4S9 IGHV4S9*01 F BK008949 [1]
IGHV4S10 IGHV4S10*01 F BK008950 [1] 1-475
IGHV4S11 IGHV4S11*01 F BK008961 [1] 1-475
IGHV4S12 IGHV4S12*01 F BK008966 [1] 1-481
IGHV4S13 IGHV4S13*01 F BK008977 [1]
IGHV4S14 IGHV4S14*01 F BK008926 [1] 1-478
IGHV4S15 IGHV4S15*01 F BK008945 [1]
IGHV4S16 IGHV4S16*01 F BK008955 [1] 1-475
IGHV4S17 IGHV4S17*01 F BK008964 [1] 1-481
IGHV4S18 IGHV4S18*01 F BK008968 [1] 1-478
IGHV4S19 IGHV4S19*01 F BK008971 [1] 1-478
IGHV5 IGHV5-1 IGHV5-1*01 ORF (30) 7q BK009012 [1]
IGHV5-2 IGHV5-2*01 F 7q BK009040 [1]
IGHV5S1 IGHV5S1*01 F BK008990 [1] 1-473
IGHV6 IGHV6-1 IGHV6-1*01 F 7q BK009057 [1] 1-487
IGHV7 IGHV7-1 IGHV7-1*01 F 7q BK009008 [1] 1-476
IGHV7S1 IGHV7S1*01 F BK008935 [1] 1-476
IGHV7S2 IGHV7S2*01 P (3) BK008937 [1] 1-475
IGHV7S3 IGHV7S3*01 P (2) BK008948 [1] 1-476
IGHV7S5 IGHV7S5*01 P (31) BK008965 [1] 1-476
IGHV7S6 IGHV7S6*01 P (3) BK008925 [1] 1-474
IGHV7S7 IGHV7S7*01 P (2) BK008954 [1] 1-476
IGHV7S9 IGHV7S9*01 P (31) BK008970 [1]
IMGT notes:
  1. (1) frameshift in L-PART1, in frame STOP-CODONs in V-REGION, no INIT-CODON
  2. (2) in frame STOP-CODON in V-REGION
  3. (3) frameshifts in V-REGION
  4. (4) in frame STOP-CODON in V-REGION, 1st-CYS is replaced by Phe
  5. (5) frameshift in FR1-IMGT
  6. (6) noncanonical DONOR-SPLICE: ngc instead of ngt, frameshifts in V-REGION
  7. (7) noncanonical V-NONAMER
  8. (8) noncanonical V-HEPTAMER
  9. (9) INIT-CODON is replaced by Thr, in frame STOP-CODON in CDR1-IMGT
  10. (10) STOP-CODONs and frameshift in V-REGION
  11. (11) frameshift in CDR2-IMGT, STOP-CODONs in L-PART1 and in V-REGION, noncanonical DONOR-SPLICE
  12. (12) frameshifts in FR3-IMGT
  13. (13) noncanonical DONOR-SPLICE: ngc instead of ngt
  14. (14) in frame STOP-CODONs in V-REGION
  15. (15) frameshifts in V-REGION, no L-PART2, STOP-CODON in L-PART1
  16. (16) STOP-CODON in L-PART2
  17. (17) in frame STOP-CODON in V-REGION, frameshifts in V-REGION, no V-RS
  18. (18) in frame STOP-CODONs in L-PART1 and in V-REGION
  19. (19) in frame STOP-CODONs in L-PART1 and in CDR1-IMGT
  20. (20) frameshifts and STOP-CODONs in V-REGION, noncanonical ACCEPTOR-SPLICE
  21. (21) frameshifts and STOP-CODONs in V-REGION
  22. (22) noncanonical DONOR-SPLICE, noncanonical ACCEPTOR-SPLICE, STOP-CODON in V-REGION
  23. (23) frameshift in CDR2-IMGT
  24. (24) deletion in FR1-IMGT (3 AA are missing)
  25. (25) INIT-CODON is replaced by Thr, frameshift in V-REGION
  26. (26) in frame STOP-CODONs in L-PART1 and V-REGION, unexpected ACCEPTOR-SPLICE position
  27. (27) in frame STOP-CODONs in L-PART2 and in FR3-IMGT
  28. (28) frameshift in FR3-IMGT, insertion in FR3-IMGT (131 nt instead of 117 nt)
  29. (29) frameshifts in V-REGION, CONSERVED-TRP is replaced by in frame STOP-CODON, noncanonical V-NONAMER
  30. (30) no V-RS
  31. (31) noncanonical DONOR-SPLICE, noncanonical ACCEPTOR-SPLICE, in frame STOP-CODON in FR3-IMGT
IMGT references:
  1. [1] Yu et al., Immunogenetics, 68(6-7), 417-428(2016). PMID:27233955
Created:
09/12/2016
Last updated:
22/09/2023
Authors:
Laurène Picandet, Perrine Pégorier