IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Isolate	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Isolate		Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRBJ1-1	TRBJ1-1*01	F			3					CM001921.1		IMGT000075	MAP	707446..707521
	TRBJ1-2	TRBJ1-2*01	F			3					CM001921.1		IMGT000075	MAP	707580..707655
	TRBJ1-3	TRBJ1-3*01	F			3					CM001921.1		IMGT000075	MAP	708199..708276
	TRBJ1-4	TRBJ1-4*01	F			3					CM001921.1		IMGT000075	MAP	708787..708865
	TRBJ1-5	TRBJ1-5*01	F			3					CM001921.1		IMGT000075	MAP	709058..709135
	TRBJ1-6	TRBJ1-6*01	F			3					CM001921.1		IMGT000075	MAP	709547..709627
	TRBJ2-1	TRBJ2-1*01	F			3					CM001921.1		IMGT000075	MAP	716942..717019
	TRBJ2-2	TRBJ2-2*01	F			3					CM001921.1		IMGT000075	MAP	717137..717215
	TRBJ2-2P	TRBJ2-2P*01	ORF	(1)		3					CM001921.1		IMGT000075	MAP	717274..717347
	TRBJ2-3	TRBJ2-3*01	F			3					CM001921.1		IMGT000075	MAP	717424..717500
	TRBJ2-4	TRBJ2-4*01	F			3					CM001921.1		IMGT000075	MAP	717560..717636
	TRBJ2-5	TRBJ2-5*01	F			3					CM001921.1		IMGT000075	MAP	717680..717755
	TRBJ2-6	TRBJ2-6*01	F			3					CM001921.1		IMGT000075	MAP	717800..717880
	TRBJ2-7	TRBJ2-7*01	F			3					CM001921.1		IMGT000075	MAP	718014..718088

MAP: Mapped reference sequences.

IMGT notes:

(1) noncanonical J-MOTIF, noncanonical J-NONAMER.

More information:

See also (IMGT Scientific chart):

Created:: 15/07/2020
Last updated:: 22/09/2023
Authors:: Joumana Jabado-Michaloud

IMGT Repertoire (IG and TR)

Gene table: Crab-eating macaque (Macaca fascicularis) TRBJ