IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

European sea bass (Dicentrarchus labrax) variable genes are designated by the locus three letter root, followed by the letter V, the subgroup number, the letter S and a number.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence
IGIV1	IGIV1S1	IGIV1S1*01	(F)		+	+						AJ291769	[1]		#c
	IGIV1S2	IGIV1S2*01	(F)		+	+						AJ291771	[1]		#c
	IGIV1S3	IGIV1S3*01	(F)		+	+						AJ291770	[1]		#c					AJ291775	[1]		#c
	IGIV1S3	IGIV1S3*01	(F)		+	+						AJ291770	[1]		#c					AJ291778	[1]		#c
	IGIV1S4	IGIV1S4*01	(F)		+	+						AJ291772	[1]		#c
	IGIV1S5	IGIV1S5*01	(F)		+	+						AJ291776	[1]		#c
	IGIV1S6	IGIV1S6*01	(F)		+	+						AJ291777	[1]		#c
	IGIV1S7	IGIV1S7*01	(F)		+	+						AJ291780	[1]		#c
	IGIV1S8	IGIV1S8*01	(F)		+	+						AJ291768	[1]		#c
	IGIV1S9	IGIV1S9*01	(F)		+	+						AJ291774	[1]		#c					AJ291779	[1]		#c
	IGIV1S10	IGIV1S10*01	(F)		+	+						AJ291773	[1]		#c
	IGIV1S11	IGIV1S11*01	(F)		+	+						AJ400216	[1]	(1)	#c					AJ400217	[1]	(1)	#c
																				AJ400219	[1]	(1)	#c
																				AJ400222	[1]	(1)	#c
																				AJ400227	[1]	(1)	#c
																				AJ400230	[1]	(1)	#c
																				AJ400231	[1]	(1)	#c
																				AJ400232	[1]	(1)	#c
																				AJ400233	[1]	(1)	#c
	IGIV1S12	IGIV1S12*01	(F)		+	+						AJ400218	[1]	(1)	#c					AJ400221	[1]	(1)	#c
	IGIV1S12	IGIV1S12*01	(F)		+	+						AJ400218	[1]	(1)	#c					AJ400225	[1]	(1)	#c
	IGIV1S13	IGIV1S13*01	(F)		+	+						AJ400220	[1]	(1)	#c
	IGIV1S14	IGIV1S14*01	(F)		+	+						AJ400223	[1]	(1)	#c
	IGIV1S15	IGIV1S15*01	(F)		+	+						AJ400224	[1]	(1)	#c
	IGIV1S16	IGIV1S16*01	(F)		+	+						AJ400226	[1]	(1)	#c
	IGIV1S17	IGIV1S17*01	(F)		+	+						AJ400228	[1]	(1)	#c
	IGIV1S18	IGIV1S18*01	(F)		+	+						AJ400229	[1]	(1)	#c

#c: rearranged cDNA.

IMGT notes:

(1) Partial V-REGION: AA 1 to 14 are missing (partial FR1-IMGT).

IMGT references:

[1] dos Santos N.M. et al., Dev. Comp. Immunol., 25, 387-401 (2001). PMID:11356219

See also (IMGT Scientific chart):

Created:: 12/05/2003
Last updated:: 22/09/2023
Authors:: Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: European seabass (Dicentrarchus labrax) IGIV