IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

The Five-ray yellowtail (Seriola quinqueradiata) IGIV genes and alleles have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.
Five-ray yellowtail (Seriola quinqueradiata) variable genes are designated by the locus three letter root, followed by the letter V, the subgroup number, the letter S and a number.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct		R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct		R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence
IGIV1	IGIV1S1	IGIV1S1*01	(F)			+	+				CL29		AB062646	[1]		#c
	IGIV1S2	IGIV1S2*01	(F)			+	+				CL10		AB062628	[1]		#c
	IGIV1S3	IGIV1S3*01	(F)			+	+				CL32		AB062649	[1]		#c
	IGIV1S4	IGIV1S4*01	(F)			+	+				CL34		AB062651	[1]		#c
	IGIV1S5	IGIV1S5*01	(F)			+	+				CL40		AB062656	[1]		#c
	IGIV1S6	IGIV1S6*01	(F)			+	+				CL46		AB062662	[1]		#c
	IGIV1S7	IGIV1S7*01	(F)			+	+				CL50		AB062665	[1]		#c				CL14	AB062632	[1]	(6)	#c
	IGIV1S8	IGIV1S8*01	(F)			+	+				CL54		AB064322	[1]		#c
	IGIV1S9	IGIV1S9*01	(F)			+	+				CL51		AB062666	[1]		#c
	IGIV1S10	IGIV1S10*01	(F)			+	+				CL04		AB062622	[1]		#c
	IGIV1S11	IGIV1S11*01	(F)			+	+				CL37		AB062654	[1]		#c
	IGIV1S12	IGIV1S12*01	(F)			+	+				CL43		AB062659	[1]		#c				CL13	AB062631	[1]		#c
	IGIV1S13	IGIV1S13*01	(P)	(1)							CL38		AB062655	[1]	(1)	#c
	IGIV1S14	IGIV1S14*01	(F)			+	+				CL01		AB062619	[1]		#c				CL35	AB062652	[1]		#c
	IGIV1S15	IGIV1S15*01	(F)			+	+				CL18		AB062635	[1]		#c
	IGIV1S16	IGIV1S16*01	(P)	(2)							CL42		AB062658	[1]	(2)	#c
	IGIV1S17	IGIV1S17*01	(P)	(3)							CL07		AB062625	[1]	(3)	#c
	IGIV1S18	IGIV1S18*01	(F)			+	+				CL08		AB062626	[1]		#c				CL16	AB062633	[1]		#c
	IGIV1S19	IGIV1S19*01	(F)			+	+				CL02		AB062620	[1]		#c
	IGIV1S20	IGIV1S20*01	(F)			+	+				CL25		AB062642	[1]		#c
	IGIV1S21	IGIV1S21*01	(P)	(4)							CL26		AB062643	[1]	(4)	#c
	IGIV1S22	IGIV1S22*01	(F)			+	+				CL31		AB062648	[1]		#c
	IGIV1S23	IGIV1S23*01	(ORF)	(5)							CL53		AB062668	[1]	(5)	#c
	IGIV1S24	IGIV1S24*01	(F)			+	+				CL49		AB062664	[1]		#c
	IGIV1S25	IGIV1S25*01	(F)			+	+				CL05		AB062623	[1]		#c
	IGIV1S26	IGIV1S26*01	(F)			+	+				CL09		AB062627	[1]		#c
	IGIV1S27	IGIV1S27*01	(F)			+	+				CL17		AB062634	[1]		#c
	IGIV1S28	IGIV1S28*01	(F)			+	+				CL11		AB062629	[1]		#c
	IGIV1S29	IGIV1S29*01	(F)			+	+				CL24		AB062641	[1]		#c
	IGIV1S30	IGIV1S30*01	(F)			+	+				CL27		AB062644	[1]		#c
	IGIV1S31	IGIV1S31*01	(F)			+	+				CL28		AB062645	[1]		#c
	IGIV1S32	IGIV1S32*01	(F)			+	+				CL44		AB062660	[1]		#c
	IGIV1S33	IGIV1S33*01	(F)			+	+				CL45		AB062661	[1]		#c
	IGIV1S34	IGIV1S34*01	(F)			+	+				CL36		AB062653	[1]		#c
	IGIV1S35	IGIV1S35*01	(F)			+	+				CL06		AB062624	[1]		#c
	IGIV1S36	IGIV1S36*01	(F)			+	+				CL12		AB062630	[1]		#c				CL52	AB062667	[1]		#c
	IGIV1S37	IGIV1S37*01	(F)			+	+				CL19		AB062636	[1]		#c
	IGIV1S38	IGIV1S38*01	(F)			+	+				CL20		AB062637	[1]		#c				CL23	AB062640	[1]		#c
	IGIV1S38	IGIV1S38*01	(F)			+	+				CL20		AB062637	[1]		#c				CL48	AB062663	[1]		#c
	IGIV1S39	IGIV1S39*01	(F)			+	+				CL03		AB062621	[1]		#c				CL41	AB062657	[1]		#c
	IGIV1S40	IGIV1S40*01	(F)			+	+				CL21		AB062638	[1]		#c				CL22	AB062639	[1]		#c
	IGIV1S41	IGIV1S41*01	(F)			+	+				CL30		AB062647	[1]		#c
	IGIV1S42	IGIV1S42*01	(F)			+	+				CL33		AB062650	[1]	(7)	#c

#c: rearranged cDNA.

IMGT notes:

(1) Pseudogene because STOP-CODON in CDR3-IMGT at codon 111 (positions 331-332 in IMGT unique numbering).
(2) Pseudogene because STOP-CODON in L-REGION.
(3) Aberrant recombination between L-REGION and V-REGION, DELETION of 5 amino acids.
(4) Aberrant recombination between the 3' end of V-REGION and the 3' end of C-REGION, DELETION of J-REGION.
(5) ORF because the 1st-CYS is not conserved.
(6) Partial V-REGION: AA 1 to 99 are missing (no FR1-IMGT, no CDR1-IMGT, no FR2-IMGT, no CDR2-IMGT and partial FR3-IMGT).
(7) INSERTION of 1 amino acid between position 32 and 33 in CDR1-IMGT (32 A).

IMGT references:

[1] Okamoto K. et al., Fish Shellfish Immunol., 14, 55-70 (2003). PMID:12547626

See also (IMGT Scientific chart):

Created:: 05/05/2003
Last updated:: 22/09/2023
Authors:: Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: Japanese amberjack (Seriola quinqueradiata) IGIV