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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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The Goldfish (Carassius auratus) IGHV genes have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHV1 IGHV1S1 IGHV1S1*01 F V3 J03616 [1,2]
IGHV2 IGHV2S1 IGHV2S1*01 ORF (1) 99A X61312 [3]
IGHV2S2 IGHV2S2*01 P (2) 6X X65266 [3]
IGHV3 IGHV3S1 IGHV3S1*01 P (3) 99B X61313 [3]
IMGT notes:
  1. (1) Non canonical V-HEPTAMER: CACTGTT instead of CACAGTG.
  2. (2) In frame STOP-CODONs in FR1-IMGT.
  3. (3) In frame STOP-CODONs in FR1-IMGT and in CDR1-IMGT.
  4. (4) J03617 originally assigned to Carassius auratus has been showed to be a human sequence (see [1] and [2]).
IMGT references:
  1. [1] Wilson M.R. et al., Proc. Natl. Acad. Sci. U.S.A., 85, 1566-1570 (1988). PMID:3125551
  2. [2] Erratum - Wilson M.R. et al., Proc. Natl. Acad. Sci. U.S.A., 86, 3276 (1989). PMID:3125551
  3. [3] Wilson M.R. et al., Mol. Immunol., 28, 449-457 (1991). PMID:1905783
Created:
08/09/1999
Last updated:
09/01/2013
Authors:
Sylvaine Artero