IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

M1 and M2 exons are not shown if not yet isolated.

IMGT gene name	IMGT allele name	Fct	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	T	Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain				Clone names	Accession numbers	Positions in the sequence
	IGHM1	IGHM1*01	F							3050	CH1	X07781	[1]						3050	M17186	[2]	(1)
											CH2	X07781	[1]
											CH3	X07781	[1]
											CH4(including CHS)	X07781	[1]
											M1	X07781	[1]
											M2	X07781	[1]
	IGHM2	IGHM2*01	F							6121	CH1	X07782	[1]		c (s)
											CH2	X07782	[1]		c (s)
											CH3	X07782	[1]		c (s)
											CH4(including CHS)	X07782	[1]		c (s)
	IGHM3	IGHM3*01	F							6125	CH1	X07783	[1]		c (s)
											CH2	X07783	[1]		c (s)
											CH3	X07783	[1]		c (s)
											CH4(including CHS)	X07783	[1]		c (s)
	IGHM4	IGHM4*01	F							12022	CH1	X07784	[1]		c (s)
											CH2	X07784	[1]		c (s)
											CH3	X07784	[1]		c (s)
											CH4(including CHS)	X07784	[1]		c (s)
	IGHM5	IGHM5*01	F							3047	CH1	M17184	[2]	(1)
											CH2
											CH3
											CH4(including CHS)
	IGHM6	IGHM6*01	F							801	CH1	M17187	[2]	(1)
											CH2
											CH3
											CH4(including CHS)
	IGHM7	IGHM7*01	F							3083	CH1	M17185	[2]	(1)
											CH2
											CH3
											CH4(including CHS)
	IGHM8	IGHM8*01	F							3089	CH1	M17188	[2]	(1)
											CH2
											CH3
											CH4(including CHS)
	IGHM9	IGHM9*01	F								CH1
											CH2
										5301TM	CH3	X07785	[1]	(1)	c (m)
										5301TM	CH4(including M)	X07785	[1]	(1)	c (m)

c: cDNA sequence.
(s): transcript of a secreted chain.
(m): transcript of a membrane chain.

IMGT notes:

(1) Partial C-REGION.

IMGT references:

[1] Kokubu F. et al., EMBO J., 7, 1979-1988 (1988). PMID:3138109
[2] Kokubu F. et al., Proc. Natl. Acad. Sci. USA, 84, 5868-5872 (1987). PMID:3475706

See also (IMGT Scientific chart):

Created:: 31/01/2002
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: horn shark (Heterodontus francisci) IGHC