IMGT Repertoire (IG and TR)


Gene table: horse (Equus caballus) IGHD

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)		 Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)
IGHD1 IGHD1-32 IGHD1-32*01 ORF (1) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 792667..792734 Thoroughbred NW_001876796 [1,2,3] 470332..470399
IGHD1-42 IGHD1-42*01 ORF (2) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 811250..811324 Thoroughbred IGHD27S1 NW_001876796 [1,2,3] 489431..489505
IGHD2 IGHD2-3 IGHD2-3*01 ORF (3) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 744490..744577 Thoroughbred IGHD4S1 NW_001876796 [1,2,3] 419927..420014
IGHD2-6 IGHD2-6*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 748135..748219 Thoroughbred IGHD7S1 NW_001876796 [1,2,3] 423705..423789
IGHD2-9 IGHD2-9*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 752737..752822 Thoroughbred IGHD9S1 NW_001876796 [1,2,3] 428306..428391
IGHD2-12 IGHD2-12*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 757566..757647 Thoroughbred IGHD10S1 NW_001876796 [1,2,3] 433536..433617
IGHD2-15 IGHD2-15*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 763594..763687 Thoroughbred IGHD13S1 NW_001876796 [1,2,3] 439566..439659
IGHD2-18 IGHD2-18*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 769477..769561 Thoroughbred IGHD7S2 NW_001876796 [1,2,3] 445668..445752
IGHD2-21 IGHD2-21*01 ORF (4) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 773953..774041 Thoroughbred IGHD15S1 NW_001876796 [1,2,3] 450373..450461
IGHD2-23 IGHD2-23*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 777722..777807 Thoroughbred IGHD16S1 NW_001876796 [1,2,3] 454786..454871
IGHD2-26 IGHD2-26*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 780620..780705 Thoroughbred IGHD18S1 NW_001876796 [1,2,3] 457804..457889
IGHD2-29 IGHD2-29*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 786534..786622 Thoroughbred IGHD15S2 NW_001876796 [1,2,3] 463928..464016
IGHD2-36 IGHD2-36*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 799375..799461 Thoroughbred IGHD22S1 NW_001876796 [1,2,3] 477095..477181
IGHD2-39 IGHD2-39*01 ORF (5) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 805148..805232 Thoroughbred IGHD25S1 NW_001876796 [1,2,3] 483028..483112
IGHD3 IGHD3-1 IGHD3-1*01 ORF (6) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 740292..740378 Thoroughbred IGHD1S1 NW_001876796 [1,2,3] 415729..415815
IGHD3-4 IGHD3-4*01 ORF (7) 24 Thoroughbred CM009171.1 IMGT000040 MAP 746481..746568 Thoroughbred IGHD5S1 NW_001876796 [1,2,3] 422051..422138
IGHD3-7 IGHD3-7*01 ORF (8) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 749964..750064 Thoroughbred NW_001876796 [1,2,3] 425534..425634
IGHD3-10 IGHD3-10*01 ORF (9) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 754926..755013
IGHD3-10*02 ORF (9) 24 + + Thoroughbred IGHD5S2 NW_001876796 [1,2,3] 430755..430842
IGHD3-13 IGHD3-13*01 ORF (10) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 759424..759513 Thoroughbred IGHD11S1 NW_001876796 [1,2,3] 435394..435483
IGHD3-16 IGHD3-16*01 ORF (11) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 765586..765672 Thoroughbred IGHD5S3 NW_001876796 [1,2,3] 441778..441864
IGHD3-19 IGHD3-19*01 ORF (12) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 770176..770261 Thoroughbred IGHD14S1 NW_001876796 [1,2,3] 446367..446452
IGHD3-22 IGHD3-22*01 ORF (13) 24 Thoroughbred CM009171.1 IMGT000040 MAP 775920..776006 Thoroughbred IGHD5S4 NW_001876796 [1,2,3] 452984..453070
IGHD3-24 IGHD3-24*01 ORF (14) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 778037..778123
IGHD3-24*02 ORF (14) 24 + + Thoroughbred NW_001876796 [1,2,3] 455101..455187
IGHD3-27 IGHD3-27*01 ORF (15) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 782697..782783 Thoroughbred IGHD5S5 NW_001876796 [1,2,3] 459961..460047
IGHD3-30 IGHD3-30*01 ORF (16) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 788744..788838 Thoroughbred IGHD5S6 NW_001876796 [1,2,3] 466290..466384
IGHD3-37 IGHD3-37*01 ORF (17) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 801175..801257 Thoroughbred IGHD23S1 NW_001876796 [1,2,3] 478895..478977
IGHD3-40 IGHD3-40*01 ORF (18) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 807273..807359 Thoroughbred IGHD26S1 NW_001876796 [1,2,3] 485454..485540
IGHD4 IGHD4-2 IGHD4-2*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 741810..741884 Thoroughbred IGHD2S1 NW_001876796 [1,2,3] 417247..417321
IGHD4-5 IGHD4-5*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 747670..747744 Thoroughbred IGHD6S1 NW_001876796 [1,2,3] 423240..423314
IGHD4-8 IGHD4-8*01 ORF (19) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 751161..751235 Thoroughbred IGHD8S1 NW_001876796 [1,2,3] 426183..427555
IGHD4-11 IGHD4-11*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 756120..756199
IGHD4-14 IGHD4-14*01 ORF (20) 24 Thoroughbred CM009171.1 IMGT000040 MAP 760875..760948 Thoroughbred IGHD12S1 NW_001876796 [1,2,3] 436845..436918
IGHD4-17 IGHD4-17*01 ORF (21) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 766794..766866 Thoroughbred IGHD8S2 NW_001876796 [1,2,3] 442986..443058
IGHD4-20 IGHD4-20*01 ORF (22) 24 Thoroughbred CM009171.1 IMGT000040 MAP 771267..771341 Thoroughbred IGHD8S3 NW_001876796 [1,2,3] 447458..447532
IGHD4-25 IGHD4-25*01 ORF (23) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 779207..779287 Thoroughbred IGHD17S1 NW_001876796 [1,2,3] 456392..456472
IGHD4-28 IGHD4-28*01 ORF (24) 24 Thoroughbred CM009171.1 IMGT000040 MAP 783885..783965 Thoroughbred IGHD17S2 NW_001876796 [1,2,3] 461149..461229
IGHD4-31 IGHD4-31*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 789945..790022 Thoroughbred IGHD19S1 NW_001876796 [1,2,3] 467491..467568
IGHD4-35 IGHD4-35*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 797811..797891 Thoroughbred IGHD21S1 NW_001876796 [1,2,3] 475534..475614
IGHD4-38 IGHD4-38*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 802426..802500 Thoroughbred IGHD24S1 NW_001876796 [1,2,3] 480146..480220
IGHD4-41 IGHD4-41*01 ORF (25) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 808516..808590 Thoroughbred IGHD12S2 NW_001876796 [1,2,3] 486698..486772
IGHD6 IGHD6-34 IGHD6-34*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 793908..793981 Thoroughbred IGHD20S1 NW_001876796 [1,2,3] 471573..471646
IGHD6-44 IGHD6-44*01 F 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 812495..812568 Thoroughbred IGHD20S2 NW_001876796 [1,2,3] 486726..486744
IGHD7 IGHD7-33 IGHD7-33*01 ORF (26) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 793147..793212 Thoroughbred NW_001876796 [1,2,3] 470801..470877
IGHD7-43 IGHD7-43*01 ORF (27) 24 + + Thoroughbred CM009171.1 IMGT000040 MAP 811749..811825 Thoroughbred IGHD28S1 NW_001876796 [1,2,3] 489930..490006

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical 5'D-NONAMER: acatactgt instead of ggattttgt, noncanonical 3'D-HEPTAMER: cacagct instead of cacagtg, noncanonical 3'D-NONAMER: ctcaaaacc instead of gcaaaaacc
  2. (2) noncanonical 5'D-NONAMER: acatactgt instead of ggattttgt
  3. (3) noncanonical 3'D-NONAMER: tccaaaacg instead of gcaaaaacc
  4. (4) nonacanonical 3'D-NONAMER: tccaaaact instead of gcaaaaacc
  5. (5) noncanonical 5'D-HEPTAMER: caccatg instead of cactgtg
  6. (6) noncanonical 5'D-NONAMER: ggtttcggg instead of ggattttgt
  7. (7) noncanonical 3'D-HEPTAMER: cacaccc instead of cacagtg
  8. (8) noncanonical 3'D-NONAMER: ccatcccca instead of gcaaaaacc
  9. (9) noncanonical 5'D-NONAMER: gatttgggg instead of ggattttgt and noncanonical 3'D-HEPTAMER: cacatcc instead of cacagtg
  10. (10) noncanonical 5'D-NONAMER: ggtttcggt instead of ggattttgt and noncanonical 3'D-HEPTAMER: cacagca instead of cacagtg
  11. (11) noncanonical 5'D-NONAMER: ggtttgcgg instead of ggattttgt and noncanonical 3'D-HEPTAMER: cacggca instead of cactgtg
  12. (12) noncanonical 5'D-HEPTAMER: tggtgtg instead of cacagtg, noncanonical 5'D-NONAMER: ctgggtgca instead of ggattttgt
  13. (13) noncanonical 5'D-NONAMER: ggttttggg instead of ggattttgt
  14. (14) noncanonical 5'D-NONAMER: ggattgggg instead of ggattttgt, noncanonical 5'D-HEPTAMER: caccctg instead of cactgtg and noncanonical 3'D-NONAMER: tcaaaagag instead of gcaaaaacc
  15. (15) noncanonical 5'D-NONAMER: ggtttggga instead of ggattttgt
  16. (16) noncanonical 5'D-NONAMER: tgtttcagg instead of ggattttgt and noncanonical 3'D-NONAMER: ctgttccag instead of gcaaaaacc
  17. (17) noncanonical 5'D-NONAMER: ggttttggg instead of ggattttgt and noncanonical 3'D-HEPTAMER: tacagca instead of cacagtg
  18. (18) noncanonical 5'D-NONAMER: agttttgg instead of ggattttgt
  19. (19) noncanonical 5'D-HEPTAMER: tattgcg instead of cactgtg
  20. (20) noncanonical 3'D-HEPTAMER: cacagca instead of cacagtg
  21. (21) noncanonical 5'D-NONAMER: tttttgtca instead of ggattttgt
  22. (22) noncanonical 5'D-NONAMER: ccttactgt instead of ggattttgt
  23. (23) noncanonical 5'D-HEPTAMER: tatcgtg instead of cactgtg
  24. (24) noncanonical 5'D-HEPTAMER: tatcgtg instead of cactgtg
  25. (25) noncanonical 5'D-NONAMER: gctttttat instead of ggattttgt, noncanonical 5'D-HEPTAMER: tactctg instead of cactgtg and noncanonical 3'D-HEPTAMER: cacgttg instead of cacagtg
  26. (26) noncanonical 5'D-NONAMER: tccgcgggg instead of ggattttgt and 5'D-HEPTAMER: cgaggtg instead of cactgtg
  27. (27) noncanonical 5'D-HEPTAMER: cgaggtg instead of cactgtg
IMGT references:
  1. [1] Walther S. et al., Dev. Comp. Immunol, 53, 303-319 (2015). PMID:26219564
  2. [2] Tallmadge R. L. et al., Dev. Comp. Immunol, 41 (1), 33-43 (2013). PMID: 23567345
  3. [3] Sun. Y. et al. Dev. Comp. Immunol. 34, 1009-1020 (2010). PMID:20466019
Created:
25/05/2020
Last updated:
22/09/2023
Authors:
Joumana Jabado-Michaloud, Marie-Paule Lefranc and Sofia Kossida