IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Little skate (Leucoraja erinacea) IGHV genes and alleles have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers			Strain	Clone names	Accession numbers	Positions in the sequence
IGHV1	IGHV1S1	IGHV1S1*01	(F)		+	+						M29672	[1]	#c
	IGHV1S2	IGHV1S2*01	(F)		+	+						M29679	[1]	#c
	IGHV1S3	IGHV1S3*01	F							Re107		X15124	[2]
	IGHV1S4	IGHV1S4*01	(F)		+	+				Re110		X15125	[2]	~VD
	IGHV1S5	IGHV1S5*01	(F)		+	+				Re102		X16146	[2]	~VD,DJ

#c: rearranged cDNA.
~VD,DJ: VD,DJ genomic DNA rearranged in the cassette.
~VD: VD genomic DNA rearranged in the cassette.

IMGT references:

[1] Harding F.A. et al., Nucleic Acids Res., 18, 6369-6376 (1990). PMID:2123029
[2] Harding F.A. et al., Nucleic Acids Res., 18, 1015-1020 (1990). PMID:2107524
[3] Roman T. et al., Immunogenetics, 43, 325-326 (1996). PMID:9110939

See also (IMGT Scientific chart):

Created:: 17/05/2001
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: little skate (Leucoraja erinacea) IGHV