IMGT Repertoire (IG and TR)


Gene table: Naked mole-rat (Heterocephalus glaber) TRBC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Isolate Clone names Accession numbers Positions in the sequence
TRBC1 TRBC1*01 F MEF-2018 RPGA01000024.1 EX1 IMGT000070 329408..329797
EX2 IMGT000070 330206..330223
EX3 IMGT000070 330347..330453
EX4 IMGT000070 330770..330772
TRBC2 TRBC2*01 F MEF-2018 RPGA01000024.1 EX1 IMGT000070 2468..2854
EX2 IMGT000070 3552..3569
EX3 IMGT000070 3727..3833
EX4 IMGT000070 4157..4174
TRBC2*02 F NMR 29 JH602132.1 EX1 IMGT000080 792712..793096
EX2 IMGT000080 793592..793609
EX3 IMGT000080 793751..793857
EX4 IMGT000080 794149..794166

Provisional nomenclature (scaffolds only, no chromosome assembly).

IMGT notes:
Created:
20/05/2021
Last updated:
22/09/2023
Authors:
Maria Georga