IMGT Repertoire (IG and TR)


Gene table: Naked mole-rat (Heterocephalus glaber) TRBJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
Secondary accession numbers Isolate Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRBJ1-1 TRBJ1-1*01 ORF (1) MEF-2018 RPGA01000024.1 IMGT000070 325064..325139
TRBJ1-2 TRBJ1-2*01 F MEF-2018 RPGA01000024.1 IMGT000070 325201..325276
TRBJ1-3 TRBJ1-3*01 F MEF-2018 RPGA01000024.1 IMGT000070 325769..325846
TRBJ1-5 TRBJ1-5*01 ORF (1) MEF-2018 RPGA01000024.1 IMGT000070 326485..326560
TRBJ1-6 TRBJ1-6*01 F MEF-2018 RPGA01000024.1 IMGT000070 326952..327032
TRBJ2-1 TRBJ2-1*01 ORF (2) MEF-2018 RPGA01000024.1 IMGT000070 333829..333906
TRBJ2-2 TRBJ2-2*01 F MEF-2018 RPGA01000024.1 IMGT000070 334022..334100
TRBJ2-3 TRBJ2-3*01 ORF (3) MEF-2018 RPGA01000024.1 IMGT000070 334298..334374
TRBJ2-4 TRBJ2-4*01 F MEF-2018 RPGA01000024.1 IMGT000070 334455..334531
TRBJ2-5 TRBJ2-5*01 F MEF-2018 RPGA01000024.1 IMGT000070 334551..334627
TRBJ2-6 TRBJ2-6*01 F MEF-2018 RPGA01000024.1 IMGT000070 334674..334754
TRBJ2-7 TRBJ2-7*01 ORF (1) MEF-2018 RPGA01000024.1 IMGT000070 334806..334880

Provisional nomenclature (scaffolds only, no chromosome assembly).

IMGT notes:
  1. (1) noncanonical J-NONAMER.
  2. (2) noncanonical J-NONAMER, noncanonical J-HEPTAMER.
  3. (3) noncanonical J-HEPTAMER.
Created:
20/05/2021
Last updated:
22/09/2023
Authors:
Maria Georga