IMGT Repertoire (IG and TR)


Gene table: Naked mole-rat (Heterocephalus glaber) TRDD

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization
R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)
Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(D-GENE-UNIT)
TRDD1 TRDD1 TRDD1*01 ORF (1) MEF-2018 RPGA01000024.1 IMGT000071 1613723..1613821
TRDD2 TRDD2 TRDD2*01 F MEF-2018 RPGA01000024.1 IMGT000071 1614187..1614262
TRDD3 TRDD3 TRDD3*01 F MEF-2018 RPGA01000024.1 IMGT000071 1627804..1627884

Provisional nomenclature (scaffolds only, no chromosome assembly).

IMGT notes:
  1. (1) noncanonical 3'D-HEPTAMER, noncanonical 3'D-NONAMER, unexpected 3'D-SPACER length, noncanonical 5'D-NONAMER
Created:
07/07/2021
Last updated:
22/09/2023
Authors:
Maria Georga