IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

**Provisional nomenclature (scaffolds only, no chromosome assembly).**
IMGT gene name	IMGT allele name		Fct	Chromosomal localization		T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name		Fct	Chromosomal localization		T	Pr	Isolate	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed	Clone names	Accession numbers	Positions in the sequence
	TRGC1		TRGC1*01	P	(2)						MEF-2018	RPGA01000026.1	EX1	IMGT000072	57227..57553
	TRGC1		TRGC1*01	P	(2)						MEF-2018	RPGA01000026.1	EX3	IMGT000072	61740..61879
	TRGC2		TRGC2*01	F							MEF-2018	RPGA01000026.1	EX1	IMGT000072	167233..167562
													EX2	IMGT000072	171500..171541
													EX3	IMGT000072	172165..172304
			TRGC2*02	F							NMR 29		EX1	IMGT000083	203799..204128
													EX2	IMGT000083	208013..208054
													EX3	IMGT000083	208678..208817
	TRGC2S1	(4)	TRGC2S1*01	P	(1)						MEF-2018	RPGA01000026.1	EX2	IMGT000072	173184..173225
	TRGC2S1	(4)	TRGC2S1*01	P	(1)						MEF-2018	RPGA01000026.1	EX3	IMGT000072	173849..173988
	TRGC3		TRGC3*01	F							MEF-2018	RPGA01000026.1	EX1	IMGT000072	235819..236148
													EX2	IMGT000072	240601..240639
													EX3	IMGT000072	242764..242903
	TRGC4		TRGC4*01	P	(3)						MEF-2018	RPGA01000026.1	EX1	IMGT000072	267318..267647
	TRGC4		TRGC4*01	P	(3)						MEF-2018	RPGA01000026.1	EX3	IMGT000072	274902..275040
	TRGC5		TRGC5*01	F							MEF-2018	RPGA01000026.1	EX1	IMGT000072	317678..318007
													EX2	IMGT000072	321341..321385
													EX3	IMGT000072	326898..327037

IMGT notes:

(1) no EX1
(2) no EX2
(3) no EX2, frameshift in EX3: deletion of 1 nt
(4) The TRGC2S1 gene may be a duplication artefact or a sequencing error and it is absent from other scaffolds -> therefore, the nomenclature is provisional.

More information:

See also (IMGT Scientific chart):

Created:: 04/10/2021
Last updated:: 22/09/2023
Authors:: Alexandre Albani

IMGT Repertoire (IG and TR)

Gene table: Naked mole-rat (Heterocephalus glaber) TRGC