IMGT Repertoire (IG and TR)


Gene table: nurse shark (Ginglymostoma cirratum) IGHD

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHD1 IGHD1*01 F G11 L38965 [1]
IGHD2 IGHD2*01 F G11 L38965 [1]
IGHD3 IGHD3*01 F G11 L38965 [1]
IGHD4 IGHD4*01 F JIIR11 L38966 [1]
IGHD5 IGHD5*01 F JIIR11 L38966 [1]
IGHD6 IGHD6*01 F JIIR5 L38967 [1]
IGHD7 IGHD7*01 F JIIR5 L38967 [1]
IGHD8 IGHD8*01 F JIIR5 L38967 [1]
IGHD9 IGHD9*01 F JIIRB5 L38968 [1]
IGHD10 IGHD10*01 F JIIRB5 L38968 [1]
IGHD11 IGHD11*01 F JIIRB5 L38968 [1]
IGHD12 IGHD12*01 (F) + + M92851 [2] #c
IGHD13 IGHD13*01 (F) + + IgM1gj AF327520 [3] #c
IGHD14 IGHD14*01 (F) + + 3-4 U18701 [1] #c
IGHD15 IGHD15*01 (F) + + 1.3 U18680 [1] #c
IGHD16 IGHD16*01 (F) + + 5A U18716 [1] #c
IGHD17 IGHD17*01 (F) + + 5Fs U18717 [1] #c
IGHD18 IGHD18*01 (F) + + 1A U18686 [1] #c
IGHD19 IGHD19*01 (F) + + 1C U18687 [1] #c
IGHD20 IGHD20*01 (F) + + 4Fs U18714 [1] #c
IGHD21 IGHD21*01 (F) + + 5H U18718 [1] #c
IGHD22 IGHD22*01 (F) + + 4.1 U18713 [1] #c
IGHD23 IGHD23*01 (F) + + 3-10 U18700 [1] #c
IGHD24 IGHD24*01 (F) + + 3-9 U18702 [1] #c
IGHD25 IGHD25*01 (F) + + 4J U18715 [1] #c
IGHD26 IGHD26*01 (F) + + 1N U18726 [1] #c
IGHD27 IGHD27*01 (F) + + 2D U18693 [1] #c
IGHD28 IGHD28*01 (F) + + 5D U18725 [1] #c
IGHD29 IGHD29*01 (F) + + 12P U18685 [1] #c
IGHD30 IGHD30*01 (F) + + 1I U18688 [1] #c
IGHD31 IGHD31*01 (F) + + 9K U18724 [1] #c
IGHD32 IGHD32*01 (F) + + 2K U18696 [1] #c
IGHD33 IGHD33*01 (F) + + 3H1 U18705 [1] #c
IGHD34 IGHD34*01 (F) + + 3G U18703 [1] #c
IGHD35 IGHD35*01 (F) + + 12A U18682 [1] #c
IGHD36 IGHD36*01 (F) + + 3L U18706 [1] #c
IGHD37 IGHD37*01 (F) + + 3G1 U18704 [1] #c
IGHD38 IGHD38*01 (F) + + 10N U18681 [1] #c
IGHD39 IGHD39*01 (F) + + 12K U18684 [1] #c
IGHD40 IGHD40*01 (F) + + 3N U18708 [1] #c
IGHD41 IGHD41*01 (F) + + 7B U18722 [1] #c
IGHD42 IGHD42*01 (F) + + 12J U18683 [1] #c
IGHD43 IGHD43*01 (F) + + 1NDs U18690 [1] #c
IGHD44 IGHD44*01 (F) + + 2H U18695 [1] #c
IGHD45 IGHD45*01 (F) + + 3S U18712 [1] #c
IGHD46 IGHD46*01 (F) + + 5NB U18719 [1] #c
IGHD47 IGHD47*01 (F) + + 2A U18691 [1] #c
IGHD48 IGHD48*01 (F) + + 2E U18694 [1] #c
IGHD49 IGHD49*01 (F) + + 5NC U18720 [1] #c
IGHD50 IGHD50*01 (F) + + 2P U18698 [1] #c
IGHD51 IGHD51*01 (F) + + 2As U18692 [1] #c
IGHD52 IGHD52*01 (F) + + 3M U18707 [1] #c
IGHD53 IGHD53*01 (F) + + 2T U18699 [1] #c
IGHD54 IGHD54*01 (F) + + 3NG U18710 [1] #c
IGHD55 IGHD55*01 (F) + + 1Is U18689 [1] #c
IGHD56 IGHD56*01 (F) + + 3NB U18709 [1] #c
IGHD57 IGHD57*01 (F) + + U51450 [4] #c
IGHD58 IGHD58*01 (F) + + 2L U18697 [1] #c
IGHD59 IGHD59*01 (F) + + 9F U18723 [1] #c

#c: rearranged cDNA.

IMGT references:
  1. [1] Greenberg A.S. et al., Nature, 374, 168-173 (1995). PMID:7877689
  2. [2] Vazquez M. et al., Mol. Immunol., 29, 1157-1158 (1992). PMID:1495502
  3. [3] Rumfelt L.L. et al., Proc. Natl. Acad. Sci. U.S.A., 98, 1775-1780 (2001). PMID:11172027
  4. [4] Greenberg A.S. et al., Eur. J. Immunol., 26, 1123-1129 (1996). PMID:8647177
Created:
31/01/2002
Last updated:
22/09/2023
Authors:
Dominique Scaviner