IMGT Repertoire (IG and TR)

Gene table: gray short-tailed opossum (Monodelphis domestica) IGHC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHA IGHA*01 (F) CH1 AF012110 [2] c(s)
H + CH2 AF012110 [2] c(s)
CH3(including CHS) AF012110 [2] c(s)
IGHA*02 (F) CH1 AF108225 [1] c(s)
H + CH2 AF108225 [1] c(s)
CH3(including CHS) AF108225 [1] c(s)
IGHE IGHE*01 (F) CH1 AF035194 [1] c(s)
CH2 AF035194 [1] c(s)
CH3 AF035194 [1] c(s)
CH4(including CHS) AF035194 [1] c(s)
IGHE*02 (F) CH1 AF098644 [4] c(s)
CH2 AF098644 [4] c(s)
CH3 AF098644 [4] c(s)
CH4(including CHS) AF098644 [4] c(s)
IGHG IGHG*01 (F) CH1 AF035195 [1] c(s)
H AF035195 [1] c(s)
CH2 AF035195 [1] c(s)
CH3(including CHS) AF035195 [1] c(s)
IGHG*02 (F) CH1 AF098643 [4] c(s)
H AF098643 [4] c(s)
CH2 AF098643 [4] c(s)
CH3(including CHS) AF098643 [4] c(s)
IGHM IGHM*01 (F) CH1 AF012109 [2] c(s)
CH2 AF012109 [2] c(s)
CH3 AF012109 [2] c(s)
CH4(including CHS) AF012109 [2] c(s)
IGHM*02 (F) CH1 AF108226 [3] c(s)
CH2 AF108226 [3] c(s)
CH3 AF108226 [3] c(s)
CH4(including CHS) AF108226 [3] c(s)
IGHM*03 (F) CH1 AF135043 [5] c(s)
CH2 AF135043 [5] c(s)
CH3 AF135043 [5] c(s)
CH4(including CHS) AF135043 [5] c(s)

c: cDNA sequence.
(s): transcript of a secreted chain.

IMGT notes:
  1. (1) M1 and M2 exons not shown if not sequenced.
IMGT references:
  1. [1] Aveskogh M. et al., Eur. J. Immunol., 28, 2738-2750 (1998). PMID:9754561
  2. [2] Miller R.D. et al., J. Immunol., 160, 259-265 (1998). PMID:9551979
  3. [3] Aveskogh M. et al., Dev. Comp. Immunol., 23, 597-606 (1999). PMID:10579388
  4. [4] Miller R.D. et al., Unpublished.
  5. [5] Rosenberg G.H. et al., Unpublished.
Last updated:
Christèle Martinez-Jean