IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	T	Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain			Clone names	Accession numbers	Positions in the sequence
	IGHA	IGHA*01	(F)								CH1	AF012110	[2]	c(s)
											H + CH2	AF012110	[2]	c(s)
											CH3(including CHS)	AF012110	[2]	c(s)
		IGHA*02	(F)								CH1	AF108225	[1]	c(s)
											H + CH2	AF108225	[1]	c(s)
											CH3(including CHS)	AF108225	[1]	c(s)
	IGHE	IGHE*01	(F)								CH1	AF035194	[1]	c(s)
											CH2	AF035194	[1]	c(s)
											CH3	AF035194	[1]	c(s)
											CH4(including CHS)	AF035194	[1]	c(s)
		IGHE*02	(F)								CH1	AF098644	[4]	c(s)
											CH2	AF098644	[4]	c(s)
											CH3	AF098644	[4]	c(s)
											CH4(including CHS)	AF098644	[4]	c(s)
	IGHG	IGHG*01	(F)								CH1	AF035195	[1]	c(s)
											H	AF035195	[1]	c(s)
											CH2	AF035195	[1]	c(s)
											CH3(including CHS)	AF035195	[1]	c(s)
		IGHG*02	(F)								CH1	AF098643	[4]	c(s)
											H	AF098643	[4]	c(s)
											CH2	AF098643	[4]	c(s)
											CH3(including CHS)	AF098643	[4]	c(s)
	IGHM	IGHM*01	(F)								CH1	AF012109	[2]	c(s)
											CH2	AF012109	[2]	c(s)
											CH3	AF012109	[2]	c(s)
											CH4(including CHS)	AF012109	[2]	c(s)
		IGHM*02	(F)								CH1	AF108226	[3]	c(s)
											CH2	AF108226	[3]	c(s)
											CH3	AF108226	[3]	c(s)
											CH4(including CHS)	AF108226	[3]	c(s)
		IGHM*03	(F)								CH1	AF135043	[5]	c(s)
											CH2	AF135043	[5]	c(s)
											CH3	AF135043	[5]	c(s)
											CH4(including CHS)	AF135043	[5]	c(s)

c: cDNA sequence.
(s): transcript of a secreted chain.

IMGT notes:

(1) M1 and M2 exons not shown if not sequenced.

IMGT references:

[1] Aveskogh M. et al., Eur. J. Immunol., 28, 2738-2750 (1998). PMID:9754561
[2] Miller R.D. et al., J. Immunol., 160, 259-265 (1998). PMID:9551979
[3] Aveskogh M. et al., Dev. Comp. Immunol., 23, 597-606 (1999). PMID:10579388
[4] Miller R.D. et al., Unpublished.
[5] Rosenberg G.H. et al., Unpublished.

See also (IMGT Scientific chart):

Created:: 08/01/2002
Last updated:: 22/09/2023
Authors:: Christèle Martinez-Jean

IMGT Repertoire (IG and TR)

Gene table: gray short-tailed opossum (Monodelphis domestica) IGHC