IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

M1 and M2 exons not shown if not sequenced.

IMGT gene name	IMGT allele name	Fct		Haplotypes	T		Pr	Positions in the locus	IMGT/LIGM-DB reference sequences												IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct		Haplotypes	T		Pr	Positions in the locus	Breed	Clone names	Exons	Accession numbers				Positions in the sequence				Secondary accession numbers	Breed	Clone names	Accession numbers		Positions in the sequence
	IGHA	IGHA*01		F		+				Landrace boar	L342C21	CH1				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												CH1				AB699687	[1]					Yorkshire			U12594	[11]	(6)	c(s)
												H+CH2		(1)		AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												H+CH2		(1)		AB699687	[1]					Yorkshire			U12594	[11]	(6)	c(s)
												CH3(including CHS)				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												CH3(including CHS)				AB699687	[1]					Yorkshire			U12594	[11]	(6)	c(s)
												M				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
	IGHD	IGHD*01		F						Landrace boar	L264P10	CH1				AB699686	[1]
												H1				AB699686	[1]
												H2				AB699686	[1]
												CH2				AB699686	[1]
												CH3				AB699686	[1]
												CHS				AB699686	[1]
												M1				AB699686	[1]
												M2				AB699686	[1]
		IGHD*02		(F)		+						CH1				AF515674	[2]		c
												H1				AF515674	[2]		c
												H2
												CH2				AF515674	[2]		c
												CH3				AF515674	[2]		c
												M1				AF515674	[2]		c
												M2				AF515674	[2]		c
		IGHD*03		(F)		+						CH1				AF411239	[2]		c(s)
												H1				AF411239	[2]		c(s)
												H2
												CH2				AF411239	[2]		c(s)
												CH3				AF411239	[2]		c(s)
												CHS				AF411239	[2]		c(s)
		IGHD*04		F								CH1				AY228505	[3]	(2)
												H1				AY228505	[3]	(2)
												H2				AY228505	[3]	(2)
												CH2				AY228505	[3]	(2)
												CH3				AY228505	[3]	(2)
												CH3				AY228506	[3]	(3)
												CHS				AY228507	[3]
												M1				AY228508	[3]
												M2				AY228508	[3]
	IGHE	IGHE*01		F		+				Landrace boar	L342C21	CH1				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												CH1				AB699687	[1]								U96100	[12]	(7)	c(s)
												CH2				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												CH2				AB699687	[1]								U96100	[12]	(7)	c(s)
												CH3				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												CH3				AB699687	[1]								U96100	[12]	(7)	c(s)
												CH4(including CHS)				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												CH4(including CHS)				AB699687	[1]								U96100	[12]	(7)	c(s)
												M1				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
												M2				AB699687	[1]					Landrace boar	L380J14		AB699688	[1]
	IGHG1	IGHG1*01		F		+				Landrace boar	L264P10	CH1				AB699686	[1]					Landrace boar	L342C21		AB699687	[1]
																						Yorkshire			U03781	[5]	(12)	c(s)
																									AF062384	[13]	(18)	c(s)
												H				AB699686	[1]					Landrace boar	L342C21		AB699687	[1]
																						Yorkshire			U03781	[5]	(12)	c(s)
																									AF062384	[13]	(18)	c(s)
												CH2				AB699686	[1]					Landrace boar	L342C21		AB699687	[1]
																						Yorkshire			U03781	[5]	(12)	c(s)
																									AF062384	[13]	(18)	c(s)
												CH3(including CHS)				AB699686	[1]					Landrace boar	L342C21		AB699687	[1]
																						Yorkshire			U03781	[5]	(12)	c(s)
																									AF062384	[13]	(18)	c(s)
												M1				AB699686	[1]					Landrace boar	L342C21		AB699687	[1]
												M2				AB699686	[1]					Landrace boar	L342C21		AB699687	[1]
		IGHG1*02		(F)		+				Minnesota miniature swine		CH1				M81770	[4]	(13)	c(s)
												H				M81770	[4]	(13)	c(s)
												CH2				M81770	[4]	(13)	c(s)
CH3(including CHS)												M81770	[4]	(13)	c(s)
IGHG1*03		(F)			+				Yorkshire		CH1	U03778	[5]	(8)	c(s)
											H	U03778	[5]	(8)	c(s)
											CH2	U03778	[5]	(8)	c(s)
											CH3(including CHS)	U03778	[5]	(8)	c(s)
IGHG1*04		P	(19)								CH1	EU263977	[6]	(4)
IGHG1*04		P	(19)								CH2	EU263977	[6]	(4)
IGHG2	IGHG2*01	(F)			+				Yorkshire		CH1	U03779	[5]	(9)	c(s)
											H	U03779	[5]	(9)	c(s)
											CH2	U03779	[5]	(9)	c(s)
											CH3(including CHS)	U03779	[5]	(9)	c(s)
	IGHG2*02	(F)			+				Minnesota miniature swine		CH1	M81769	[4]	(10)	c(s)
											H	M81769	[4]	(10)	c(s)
											CH2	M81769	[4]	(10)	c(s)
											CH3(including CHS)	M81769	[4]	(10)	c(s)
	IGHG2*03	(F)			+				Yorkshire		CH1	U03780	[5]	(11)	c(s)
											H	U03780	[5]	(11)	c(s)
											CH2	U03780	[5]	(11)	c(s)
											CH3(including CHS)	U03780	[5]	(11)	c(s)
IGHG3	IGHG3*01	F							Landrace boar	L264P10	CH1	AB699686	[1]
											H	AB699686	[1]
											CH2	AB699686	[1]
											CH3(including CHS)	AB699686	[1]
											M1	AB699686	[1]
											M2	AB699686	[1]
	IGHG3*02	F								747A01	CH1	AB513625	[7]
											H	AB513625	[7]
											CH2	AB513625	[7]
											CH3(including CHS)	AB513625	[7]
											M1	AB513625	[7]
											M2	AB513625	[7]
	IGHG3*03	F									CH1	EU372658	[8]
											H	EU372658	[8]
											CH2	EU372658	[8]
											CH3(including CHS)	EU372658	[8]
IGHG4	IGHG4*01	F									CH1	EU372654	[8]
											H	EU372654	[8]
											CH2	EU372654	[8]
											CH3(including CHS)	EU372654	[8]
	IGHG4*02	(F)			+				Yorkshire		CH1	U03782	[5]	(5)	c(s)
											H	U03782	[5]	(5)	c(s)
											CH2	U03782	[5]	(5)	c(s)
											CH3(including CHS)	U03782	[5]	(5)	c(s)
IGHG5-1	IGHG5-1*01	F							Landrace boar	L264P10	CH1	AB699686	[1]
											H	AB699686	[1]
											CH2	AB699686	[1]
											CH3(including CHS)	AB699686	[1]
											M1	AB699686	[1]
											M2	AB699686	[1]
	IGHG5-1*02	F								747A01	CH1	AB513625	[7]
											H	AB513625	[7]
											CH2	AB513625	[7]
											CH3(including CHS)	AB513625	[7]
											M1	AB513625	[7]
											M2	AB513625	[7]
	IGHG5-1*03	F								747A01	CH1	EU372656	[8]	(2)
											H	EU372656	[8]	(2)
											CH2	EU372656	[8]	(2)
											CH3(including CHS)	EU372656	[8]	(2)
IGHG5-2	IGHG5-2*01	F							Landrace boar	L264P10	CH1	AB699686	[1]								Landrace boar	L342C21	AB699687	[1]
											H	AB699686	[1]								Landrace boar	L342C21	AB699687	[1]
											CH2	AB699686	[1]								Landrace boar	L342C21	AB699687	[1]
											CH3(including CHS)	AB699686	[1]								Landrace boar	L342C21	AB699687	[1]
											M1	AB699686	[1]								Landrace boar	L342C21	AB699687	[1]
											M2	AB699686	[1]								Landrace boar	L342C21	AB699687	[1]
	IGHG5-2*02	F									CH1	EU372657	[8]
											H	EU372657	[8]
											CH2	EU372657	[8]
											CH3(including CHS)	EU372657	[8]
IGHG6-1	IGHG6-1*01	F							Landrace boar	L342C21	CH1	AB699687	[1]
											H	AB699687	[1]
											CH2	AB699687	[1]
											CH3(including CHS)	AB699687	[1]
											M1	AB699687	[1]
											M2	AB699687	[1]
	IGHG6-1*02	F							Minnesota miniature swine		CH1	M81771	[4]	(14)	c(s)
											H	M81771	[4]	(14)	c(s)
											CH2	M81771	[4]	(14)	c(s)
											CH3(including CHS)	M81771	[4]	(14)	c(s)
IGHG6-2	IGHG6-2*01	F							Landrace boar	L342C21	CH1	AB699687	[1]								Landrace boar	L380J14	AB699688	[1]
											H	AB699687	[1]								Landrace boar	L380J14	AB699688	[1]
											CH2	AB699687	[1]								Landrace boar	L380J14	AB699688	[1]
											CH3(including CHS)	AB699687	[1]								Landrace boar	L380J14	AB699688	[1]
											M1	AB699687	[1]								Landrace boar	L380J14	AB699688	[1]
											M2	AB699687	[1]								Landrace boar	L380J14	AB699688	[1]
	IGHG6-2*02	F									CH1	EU372655	[8]
											H	EU372655	[8]
											CH2	EU372655	[8]
											CH3(including CHS)	EU372655	[8]
	IGHG6-2*03	F									CH1	EU372653	[8]	(2)
											H	EU372653	[8]	(2)
											CH2	EU372653	[8]	(2)
											CH3(including CHS)	EU372653	[8]	(2)
IGHM	IGHM*01	F							Landrace boar	L264P10	CH1	AB699686	[1]
											CH2	AB699686	[1]
											CH3	AB699686	[1]
											CH4(including CHS)	AB699686	[1]
											M1	AB699686	[1]
											M2	AB699686	[1]
	IGHM*02	F								cjh-cu	CH1	U50149	[9]	(15)
											CH2	U50149	[9]	(15)
											CH3	U50149	[9]	(15)
											CH4(including CHS)	U50149	[9]	(15)
											M1	U50148	[9]	(16)
											M2	U50148	[9]	(16)
	IGHM*03	(P)	(20)		+				Minnesota miniature swine		CH1	M92050	[10]	(17)	c(s)
											CH2	M92050	[10]	(17)	c(s)
											CH3	M92050	[10]	(17)	c(s)
											CH4(including CHS)	M92050	[10]	(17)	c(s)

c: cDNA sequence.
(s): Transcript of a secreted chain.

IMGT notes:

(1) In the IGHA gene, the hinge (H) and the CH2 are joined in a single exon.
(2) Partial C-GENE: partial CH3 in 3'.
(3) Partial C-GENE: partial CH3 in 5'.
(4) Partial C-GENE: partial CH1 in 5' and partial CH2 in 3'.In this sequence the CH1 domain is downstream of CH2 domain owing to wrong assembly
(5) Partial C-GENE: partial CH1 in 5'. Previously assigned to IGHG4*01 reference sequence
(6) Previously assigned to IGHA*01 reference sequence
(7) Previously assigned to IGHE*01 reference sequence
(8) Previously assigned to IGHG1*01 reference sequence
(9) Previously assigned to IGHG2A*01 reference sequence
(10) Previously assigned to IGHG2A*02 reference sequence
(11) Previously assigned to IGHG2B*01 reference sequence
(12) Previously assigned to IGHG3*01 reference sequence
(13) Previously assigned to IGHG3*02 reference sequence
(14) Previously assigned to IGHG5*01 reference sequence
(15) Previously assigned to IGHM*01 reference sequence
(16) Previously assigned to IGHM*01 reference sequence
(17) Previously assigned to IGHM*02 reference sequence
(18) Previously assigned to IGHG3*01 sequence from the literature
(19) Frameshift in CH2
(20) Frameshift in CH3

IMGT references:

[1] Eguchi-Ogawa T. et al., Mol. Immunol. 52(3-4):97-107(2012). PMID:22673207
[2] Zhao Y. et al., J. Immunol. 169(8):4408-4416(2002). PMID:12370374
[3] Zhao Y. et al., J. Immunol. 171(3):1312-1318(2003). PMID:12874220
[4] Bosch B.L. et al., Unpublished.
[5] Kacskovics I. et al., J. Immunol. 153(8):3565-3573(1994). PMID:7930579
[6] Chung H.Y., Mol. Biol. Rep. 38(6):3777-3785(2011). PMID:21113678
[7] Eguchi-Ogawa T. et al., J. Immunol. 184(7):3734-3742(2010). PMID:20207992
[8] Butler J.E. et al., Immunogenetics 61(3):209-230(2009). PMID:19048248
[9] Sun J. et al., Immunogenetics 46(6):452-460(1997). PMID:9321424
[10] Bosch B.L. et al., Dev. Comp. Immunol. 16(4):329-337(1992). PMID:1505693
[11] Brown W.R. et al., Mol. Immunol. 31(8):633-642(1994). PMID:7545929
[12] Vernersson M. et al., Immunogenetics 46(6):461-468(1997). PMID:9321425
[13] Zhao K. et al., Unpublished (1998).

See also (IMGT Scientific chart):

Created:: 12/11/2001
Last updated:: 22/09/2023
Authors:: Saida Saljoqi, Christèle Martinez-Jean

IMGT Repertoire (IG and TR)

Gene table: pig (Sus scrofa) IGHC