IMGT Repertoire (IG and TR)

Gene table: pig (Sus scrofa) TRDJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence (J-REGION) Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence (J-REGION)
TRDJ1 TRDJ1*01 F + + 1-2000 TRDJ1 MAP AB053451 [2] 1498-1551 D49560 [1] (1) c(st)
TRDJ2 TRDJ2*01 F + + 7001-10000 TRDJ2 MAP AB053451 [2] 8371-8427 D49561 [1] (1) c(st)
TRDJ3 TRDJ3*01 F + + 10001-13000 TRDJ3 MAP AB053451 [2] 11129-11187 D49562 [1] (1) c(st)
TRDJ4 TRDJ4*01 F + + 2001-7000 TRDJ4 MAP AB053451 [2] 6942-6990 D49563 [1] #c

MAP: Mapped reference sequences.
#c: rearranged cDNA.
c: cDNA sequence.
(st): sterile transcript.

IMGT notes:
  1. (1) The 5' end and 5' J-RS (position 1-36) show many discrepancies with AB053451 which are probably cloning or sequencing errors.
IMGT references:
  1. [1] Yang Y.G. et al., J. Immunol., 155, 1981-1993 (1995). PMID:7636249
  2. [2] Uenishi H. et al., Immunology, 109, 515-526 (2003). PMID:12871218
Last updated:
Nathalie Bosc