IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Haplotypes	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences									IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Haplotypes	T	Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers		Positions in the sequence			Secondary accession numbers	Strain	Clone names	Accession numbers	Positions in the sequence
	IGHA	IGHA*01	F					UTS522		CH1		AB013765	[1]	(2)
								UTS522		H+CH2	(1)	AB013765	[1]	(2)
										CH3(including CHS)
										M
		IGHA*02	F					UTS496		CH1		AB013771	[1]	(2)
								UTS496		H+CH2	(1)	AB013771	[1]	(2)
										CH3 (including CHS)
										M
	IGHG1	IGHG1*01	F							CH1		JQ868732	[2]
										H		JQ868732	[2]
										CH2		JQ868732	[2]
										CH3(including CHS)		JQ868732	[2]
										M1
										M2
	IGHG2	IGHG2*01	F							CH1		JQ868733	[2]
										H		JQ868733	[2]
										CH2		JQ868733	[2]
										CH3(including CHS)		JQ868733	[2]
										M1
										M2
	IGHG3	IGHG3*01	F							CH1		JQ868734	[2]
										H		JQ868734	[2]
										CH2		JQ868734	[2]
										CH3(including CHS)		JQ868734	[2]
										M1
										M2
	IGHG4	IGHG4*01	F							CH1		JQ868735	[2]
										H		JQ868735	[2]
										CH2		JQ868735	[2]
										CH3(including CHS)		JQ868735	[2]
										M1
										M2

IMGT notes:

(1) In the IGHA gene, the hinge (H) and CH2 are joined in a single exon.
(2) Partial C-GENE: CH1 is partial in 5' and CH2 is partial in 3'.

IMGT references:

[1] Sumiyama K. et al., Mol. Biol. Evol., 19, 1093-1099 (2002). PMID:12082128
[2] Attanasio R., Unpublished (2012).

See also (IMGT Scientific chart):

Created:: 04/11/2002
Last updated:: 22/09/2023
Authors:: Saida Saljoqi, Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: pig-tailed macaque (Macaca nemestrina) IGHC