IMGT Repertoire (IG and TR)

Gene table: platypus (Ornithorhynchus anatinus) IGHJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Accession numbers Positions in the sequence (J-GENE-UNIT) Secondary accession numbers Isolate Clone names Accession numbers Positions in the sequence (J-GENE-UNIT)
IGHJ1 IGHJ1*01 F Glennie NW_001794226 [1] complement(445654..445745)
IGHJ2 IGHJ2*01 ORF (1) Glennie NW_001794226 [1] complement(445372..445442)
IGHJ3 IGHJ3*01 F Glennie NW_001794226 [1] complement(444791..444883)
IGHJ4 IGHJ4*01 F Glennie NW_001794226 [1] complement(444492..444584)
IGHJ5 IGHJ5*01 F Glennie NW_001794226 [1] complement(444203..444295)
IGHJ6 IGHJ6*01 F Glennie NW_001794226 [1] complement(443902..443994)
IGHJ7 IGHJ7*01 F Glennie NW_001794226 [1] complement(443620..443712)
IGHJ8 IGHJ8*01 F Glennie NW_001794226 [1] complement(443327..443416)
IGHJ9 IGHJ9*01 F Glennie NW_001794226 [1] complement(442864..442950)
IGHJ10 IGHJ10*01 F Glennie NW_001794226 [1] complement(442440..442529)
IGHJ11 IGHJ11*01 F Glennie NW_001794226 [1] complement(441523..441611)
IMGT notes:
  1. (1) deletion in J-SPACER (18 nt instead of 23 nt)
IMGT references:
  1. [1] Warren,W.C. et al., Nature. 453(7192):175-183 (2008).
Last updated:
Saida Saljoqi