IMGT Repertoire (IG and TR)

Gene table: common brushtail (Trichosurus vulpecula) IGHC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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M1 and M2 exons not shown if not sequenced.

IMGT gene name IMGT allele name Fct Haplotypes T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHA IGHA*01 (F) Calpha CH1 AF027382 [1] c(s)
H + CH2 AF027382 [1] c(s)
CH3 (including CHS) AF027382 [1] c(s)
IGHA*02 (F) CH1 AF091139 [4] c(s)
H + CH2 AF091139 [4] c(s)
CH3 (including CHS) AF091139 [4] c(s)
IGHE IGHE*01 (F) CH1 AF157617 [2] (1) c(s)
CH2 AF157617 [2] c(s)
CH3 AF157617 [2] c(s)
CH4 (including CHS) AF157617 [2] c(s)
IGHG IGHG*01 (F) CH1 AF157619 [2] c(s)
H AF157619 [2] c(s)
CH2 AF157619 [2] c(s)
CH3 (including CHS) AF157619 [2] c(s)
IGHG*02 (F) CH1 AF191648 [3] (1) c(s)
H AF191648 [3] c(s)
CH2 AF191648 [3] c(s)
CH3 (including CHS) AF191648 [3] c(s)
IGHM IGHM*01 (F) CH1 AF157618 [2] c(s)
CH2 AF157618 [2] c(s)
CH3 AF157618 [2] c(s)
CH4 (including CHS) AF157618 [2] c(s)

c: cDNA sequence.
(s): Transcript of a secreted chain.

IMGT notes:
  1. (1) Partial C-REGION: partial CH1 in 5' side.
IMGT references:
  1. [1] Belov K. et al., Immunol. Lett., 60, 165-170 (1998). PMID:9557959
  2. [2] Belov K. et al., Mol. Immunol., 36, 1255-1261 (1999). PMID:10684965
  3. [3] Adamski F.M. et al., Mol. Immunol., 37, 435-444 (2000). PMID:11090878
  4. [4] Adamski F.M. et al., Unpublished.
Last updated:
Christèle Martinez-Jean