IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

M1 and M2 exons not shown if not sequenced.

IMGT gene name	IMGT allele name	Fct	Haplotypes	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences									IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Haplotypes	T	Pr	Positions in the locus	Strain	Clone names	Exons	Accession numbers	Positions in the sequence				Secondary accession numbers	Strain	Clone names	Accession numbers	Positions in the sequence
	IGHA	IGHA*01	(F)						Calpha	CH1	AF027382	[1]		c(s)
										H + CH2	AF027382	[1]		c(s)
										CH3 (including CHS)	AF027382	[1]		c(s)
		IGHA*02	(F)							CH1	AF091139	[4]		c(s)
										H + CH2	AF091139	[4]		c(s)
										CH3 (including CHS)	AF091139	[4]		c(s)
	IGHE	IGHE*01	(F)							CH1	AF157617	[2]	(1)	c(s)
										CH2	AF157617	[2]		c(s)
										CH3	AF157617	[2]		c(s)
										CH4 (including CHS)	AF157617	[2]		c(s)
	IGHG	IGHG*01	(F)							CH1	AF157619	[2]		c(s)
										H	AF157619	[2]		c(s)
										CH2	AF157619	[2]		c(s)
										CH3 (including CHS)	AF157619	[2]		c(s)
		IGHG*02	(F)							CH1	AF191648	[3]	(1)	c(s)
										H	AF191648	[3]		c(s)
										CH2	AF191648	[3]		c(s)
										CH3 (including CHS)	AF191648	[3]		c(s)
	IGHM	IGHM*01	(F)							CH1	AF157618	[2]		c(s)
										CH2	AF157618	[2]		c(s)
										CH3	AF157618	[2]		c(s)
										CH4 (including CHS)	AF157618	[2]		c(s)

c: cDNA sequence.
(s): Transcript of a secreted chain.

IMGT notes:

(1) Partial C-REGION: partial CH1 in 5' side.

IMGT references:

[1] Belov K. et al., Immunol. Lett., 60, 165-170 (1998). PMID:9557959
[2] Belov K. et al., Mol. Immunol., 36, 1255-1261 (1999). PMID:10684965
[3] Adamski F.M. et al., Mol. Immunol., 37, 435-444 (2000). PMID:11090878
[4] Adamski F.M. et al., Unpublished.

See also (IMGT Scientific chart):

Created:: 08/01/2002
Last updated:: 22/09/2023
Authors:: Christèle Martinez-Jean

IMGT Repertoire (IG and TR)

Gene table: common brushtail (Trichosurus vulpecula) IGHC