IMGT Repertoire (IG and TR)


Gene table: rainbow trout (Oncorhynchus mykiss) IGHD

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence (D-REGION) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (D-REGION)
IGHD1 IGHD1 IGHD1*01 F AY872256 [1] 29298-29334
IGHD2 IGHD2 IGHD2*01 F AY872256 [1] 30075-30087
IGHD3 IGHD3 IGHD3*02 F AY872256 [1] 30349-30363
IGHD4 IGHD4 IGHD4*01 F AY872256 [1] 73910-73922
IGHD5 IGHD5 IGHD5*01 F AY872256 [1] 74361-74374
IGHD6 IGHD6 IGHD6*01 F AY872256 [1] 74803-74814
IGHD7 IGHD7 IGHD7*01 F AY872256 [1] 75590-75601
IGHD8 IGHD8 IGHD8*01 F AY872256 [1] 76032-76043
IGHD9 IGHD9 IGHD9*01 F AY872256 [1] 76487-76498
IMGT references:
  1. [1] Hansen J.D. et al., Proc. Natl. Acad. Sci. U.S.A., 102, 6919-6924 (2005). PMID:15863615
Created:
15/12/2009
Last updated:
22/09/2023
Authors:
Géraldine Folch & Amandine Lacan