IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed				Clone names		Accession numbers	Positions in the sequence (J-GENE-UNIT)
	IGHJ1	IGHJ1*01	F			13	+	+		Swanson	CM007947.1		IMGT000043			MAP	342907..342995				AY872256	[1]	(3)	91375..91464
	IGHJ1D	IGHJ1D*01	F			12				Swanson	CM007946.1		IMGT000044			MAP	471410..471499
	IGHJ1T1	IGHJ1T1*01	F			13				Swanson	CM007947.1		IMGT000043			MAP	216515..216601
	IGHJ1T1D	IGHJ1T1D*01	F			12				Swanson	CM007946.1		IMGT000044			MAP	375904..375990
	IGHJ1T2	IGHJ1T2*01	F			13	+	+		Swanson	CM007947.1		IMGT000043			MAP	270858..270944				AY872256	[1]	(3)	30704..30790
	IGHJ2	IGHJ2*01	F			13				Swanson	CM007947.1		IMGT000043			MAP	343076..343164				AY872256	[1]	(3)	91545..91633
	IGHJ2D	IGHJ2D*01	ORF	(1)		12	+	+		Swanson	CM007946.1		IMGT000044			MAP	471559..471609	(2)
	IGHJ2T1	IGHJ2T1*01	F			13				Swanson	CM007947.1		IMGT000043			MAP	216990..217081
	IGHJ2T1D	IGHJ2T1D*01	F			12				Swanson	CM007946.1		IMGT000044			MAP	376411..376502
	IGHJ2T2	IGHJ2T2*01	F			13				Swanson	CM007947.1		IMGT000043			MAP	271370..271461
	IGHJ2T2	IGHJ2T2*02	F			13							AY872256	[1]	(3)		31216..31307
	IGHJ3	IGHJ3*01	F			13	+	+		Swanson	CM007947.1		IMGT000043			MAP	343280..343369				AY872256	[1]	(3)	91749..91838
	IGHJ3D	IGHJ3D*01	F			12				Swanson	CM007946.1		IMGT000044			MAP	472905..472994
	IGHJ4	IGHJ4*01	F			13	+	+		Swanson	CM007947.1		IMGT000043			MAP	343639..343728				AY872256	[1]	(3)	92108..92197
	IGHJ4D	IGHJ4D*01	F			12				Swanson	CM007946.1		IMGT000044			MAP	473075..473163
	IGHJ5	IGHJ5*01	F			13	+	+		Swanson	CM007947.1		IMGT000043			MAP	344025..344112
	IGHJ5	IGHJ5*02	F			13							AY872256	[1]	(3)		92494..92581
	IGHJ5D	IGHJ5D*01	F			12	+	+		Swanson	CM007946.1		IMGT000044			MAP	473279..473368
	IGHJ6	IGHJ6*01	ORF	(1)		13	+	+		Swanson	CM007947.1		IMGT000043			MAP	356193..356243	(2)
	IGHJ6D	IGHJ6D*01	F			12				Swanson	CM007946.1		IMGT000044			MAP	473638..473727
	IGHJ7D	IGHJ7D*01	F			12				Swanson	CM007946.1		IMGT000044			MAP	474026..474114

MAP: Mapped reference sequences.

IMGT notes:

(1) functionality defined as ORF because partial gene in 5'
(2) Positions of J-REGION
(3) Sequence not in locus reference sequences (IMGT000043 and IMGT000044)

IMGT references:

[1] Hansen J.D. et al., Proc. Natl. Acad. Sci. U.S.A., 102, 6919-6924 (2005).. PMID:15863615

More information:

Archives:

See also (IMGT Scientific chart):

Created:: 16/09/2019
Last updated:: 22/09/2023
Authors:: Saida Hadi-Saljoqi

IMGT Repertoire (IG and TR)

Gene table: rainbow trout (Oncorhynchus mykiss) IGHJ