IMGT Repertoire (IG and TR)

Gene table: rainbow trout (Oncorhynchus mykiss) IGIJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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See Correspondence between nomenclatures: Teleostei IGIC.

IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIJ1S1 IGIJ1S1*01 F IGIJE2 AJ251651 [3]
IGIJ1S2 IGIJ1S2*01 F rtSg 9 X68522 [1] c(st)
IGIJ1S3 IGIJ1S3*01 F rtSg 4 X68520 [1] c(st)
IGIJ1S4 IGIJ1S4*01 (F) + + rtSg E X65260 [1] #c
IGIJ1S5 IGIJ1S5*01 (F) + + rtSg 10 X68517 [1] #c
IGIJ1S6 IGIJ1S6*01 (F) + + rtSg 3 X68519 [1] #c
IGIJ1S7 IGIJ1S7*01 (F) + + rtSg 6 X68521 [1] #c
IGIJ2S1 IGIJ2S1*01 F IGL2J1C31-2 AJ251648 [3]
IGIJ2S2 IGIJ2S2*01 F IGL2J2C31-2 AJ251648 [3]
IGIJ2S3 IGIJ2S3*01 (F) + + VL2a U69987 [2] #c

#c: rearranged cDNA.
c: cDNA sequence.
(st): sterile transcript.

IMGT references:
  1. [1] Daggfeldt A. et al., Immunogenetics, 38, 199-209 (1993). PMID:8505063
  2. [2] Partula S. et al., Immunogenetics, 45, 44-51 (1996). PMID:8881036
  3. [3] Timmusk S. et al., Immunogenetics, 51, 905-914 (2000). PMID:11003384
Last updated:
Sylvaine Artero, Nathalie Bosc