IMGT Repertoire (IG and TR)

Gene table: rainbow trout (Oncorhynchus mykiss) IGIV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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See Correspondence between nomenclatures: Teleostei IGIC.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIV1 IGIV1S1 IGIV1S1*01 F IGIVE2 AJ251651 [3]
IGIV1S2 IGIV1S2*01 (F) + + rtSg 6 X68521 [1] (1) #c
IGIV1S3 IGIV1S3*01 (F) + + rtSg 10 X68517 [1] #c
IGIV1S4 IGIV1S4*01 (F) + + rtSg E X65260 [1] #c
IGIV1S5 IGIV1S5*01 (F) + + rtSg 3 X68519 [1] #c
IGIV2 IGIV2S1 IGIV2S1*01 F IGL2V1A31 AJ251649 [3] (2)
IGIV2S2 IGIV2S2*01 F IGL2V3C31-2 AJ251648 [3] (2)
IGIV2S3 IGIV2S3*01 F IGL2V4C31-2 AJ251648 [3] (2)
IGIV2S4 IGIV2S4*01 (F) + + VL2a U69987 [2] (2) #c
IGIV2S5 IGIV2S5*01 (F) + + VL2b U69988 [2] #c
IGIV2S6 IGIV2S6*01 (F) + + VL2c U69989 [2] #c
IGIV2S7 IGIV2S7*01 (F) + + VL2d U69990 [2] #c
IGIV2S8 IGIV2S8*01 F IGL2V1C21 AJ251650 [3] (3)
IGIV2S9 IGIV2S9*01 ORF (4) IGL2V2C31-1 AJ251647 [3] (4)
IGIV2S10 IGIV2S10*01 P (5) IGL2V2A31 AJ251649 [3] (5)
IGIV2S11 IGIV2S11*01 ORF (6) IGL2V1C31-1 AJ251647 [3] (6)
IGIV2S12 IGIV2S12*01 F IGL2V5C31-1 AJ251648 [3]
IGIV2S13 IGIV2S13*01 F IGL2V2C21 AJ251650 [3]

#c: rearranged cDNA.

IMGT notes:
  1. (1) Partial V-REGION: AA 1 to 55 are missing (no FR1-IMGT, no CDR1-IMGT and no FR2-IMGT).
  2. (2) INSERTIONs of 5 amino acids between positions 60 and 61 in CDR2-IMGT (60A, 60B, 60C, 60D and 60E).
  3. (3) Partial V-REGION: AA 1 to 49 are missing (no FR1-IMGT, no CDR1-IMGT and partial FR2-IMGT).
  4. (4) ORF because unusual V-HEPTAMER sequence: ACACGTG instead of CACAGTG.
  5. (5) Pseudogene because frameshift in FR3-IMGT.
  6. (6) ORF because unusual V-NONAMER sequence: AAAAAAAGG instead of ACAAAAACC.
IMGT references:
  1. [1] Daggfeldt A. et al., Immunogenetics, 38, 199-209 (1993). PMID:8505063
  2. [2] Partula S. et al., Immunogenetics, 45, 44-51 (1996). PMID:8881036
  3. [3] Timmusk S. et al., Immunogenetics, 51, 905-914 (2000). PMID:11003384
Last updated:
Sylvaine Artero, Nathalie Bosc