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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)		 Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRGJ1-1 TRGJ1-1*01 ORF (1) 3 AG07107 CM014338.1 IMGT000059 MAP 87094..87181
TRGJ1-2 TRGJ1-2*01 F (2) 3 + + AG07107 CM014338.1 IMGT000059 MAP 89765..89854
TRGJ2-1 TRGJ2-1*01 ORF (3) 3 AG07107 CM014338.1 IMGT000059 MAP 112699..112786
TRGJ2-2 TRGJ2-2*01 P (4) 3 AG07107 CM014338.1 IMGT000059 MAP 114888..114950 (5)
TRGJ2-3 TRGJ2-3*01 F 3 AG07107 CM014338.1 IMGT000059 MAP 118964..119041

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) noncanonical J-MOTIF: FAXG instead of FGXG
  2. (2) noncanonical J-NONAMER: taaattctt instead of gatttttgt however this J-GENE has been found rearranged
  3. (3) noncanonical J-MOTIF: FAXG instead of FGXG
  4. (4) STOP-CODON in J-REGION and no J-RS
  5. (5) position of J-REGION
Created:
04/12/2019
Last updated:
22/09/2023
Authors:
Viviane Nguefack Ngoune