IMGT Repertoire (IG and TR)


Gene table: Ring-tailed lemur (Lemur catta) IGHC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct Serological
markers
or Allotype
Chromosomal
localization
T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Isolate Clone names Accession numbers Positions in the sequence
IGHM IGHM*01 P (1) 1 mLemCat1 CM036472.1 CH1 IMGT000097 MAP 454515..454826
CH2 IMGT000097 MAP 454947..455286
CH3 IMGT000097 MAP 455785..456103
CH4 (including CHS) IMGT000097 MAP 456183..456578
M1 IMGT000097 MAP 459676..459791
M2 IMGT000097 MAP 459978..459983
IGHG1 IGHG1*01 F 1 mLemCat1 CM036472.1 CH1 IMGT000097 MAP 484669..484962
H IMGT000097 MAP 485194..485233
CH2 IMGT000097 MAP 485354..485683
CH3 (including CHS) IMGT000097 MAP 485802..486121
M1 IMGT000097 MAP 487307..487437
M2 IMGT000097 MAP 488620..488700
IGHE IGHE*01 F 1 mLemCat1 CM036472.1 CH1 IMGT000097 MAP 503772..504065
CH2 IMGT000097 MAP 504303..504626
CH3 IMGT000097 MAP 504714..505034
CH4 (including CHS) IMGT000097 MAP 505113..505442
M1 IMGT000097 MAP 507334..507467
M2 IMGT000097 MAP 507551..507619
IGHA IGHA*01 F 1 mLemCat1 CM036472.1 CH1 IMGT000097 MAP 515551..515852
H+CH2 IMGT000097 MAP 516087..516413
CH3 (including CHS) IMGT000097 MAP 516639..517030
M IMGT000097 MAP 519743..519946

(s): trancript of a secreted chain.
(m): trancript of a membrane chain.

IMGT notes:
  1. (1) STOP-CODON in CH4
IMGT references:
  1. [1] Marques T. et al., Unpublished.
  2. [2] Johnson,J. et al., Unpublished.
Created:
03/08/2022
Last updated:
22/09/2023
Authors:
Turkan Samadova