Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of ring-tailed lemur (Lemur catta) IGLC IMGT group:
IMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation		Chromosomosal
localization		ExonsR T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers		Positions
in the sequence		Secondary
accession
numbers		IsolateClone namesAccession
numbers		Positions
in the sequence
IGLC1 IGLC1*01 F C-REGION mLemCat1 IMGT000104 1212209-1212525
IGLC2 IGLC2*01 F C-REGION mLemCat1 IMGT000104 1217911-1218227
IGLC3 IGLC3*01 F C-REGION mLemCat1 IMGT000104 1222566-1222882
IGLC4 IGLC4*01 P (1) C-REGION mLemCat1 IMGT000104 1228127-1228443
IGLC5 IGLC5*01 P (1) C-REGION mLemCat1 IMGT000104 1232781-1233097
IGLC6 IGLC6*01 F C-REGION mLemCat1 IMGT000104 1238484-1238800
IGLC7 IGLC7*01 F C-REGION mLemCat1 IMGT000104 1244042-1244358
IGLC8 IGLC8*01 F C-REGION mLemCat1 IMGT000104 1248693-1249009
IGLC9 IGLC9*01 F C-REGION mLemCat1 IMGT000104 1253346-1253662
IGLC10 IGLC10*01 F C-REGION mLemCat1 IMGT000104 1258809-1259125
IMGT notes: ↑
  1. STOP-CODON in C-REGION