IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

cDNAs have been included in this table as they are informative for the gene content of the corresponding genomic cassettes.

Cassette		Clone name	Gene name	Exon	Accession numbers
Cassette
1	#c	4RACE	IGHV1S1		U40560
			IGHD1
			IGHJ1
			IGHW1	CH1
				CH2
				CH3
				CH4
				CH5
				CH6
2	#c	2spleen	IGHV1S3		U50605
			IGHD2
			IGHJ2
			IGHW2	CH1
				CH2
				CH3
				CH4
				CH5
				CH6
3	#c	6spleen	IGHV1S2		U50604
			IGHD3
			IGHJ3
4	#c	8RACE	IGHV1S5		U50607
			IGHD4
			IGHJ4
5	#c	1RACE	IGHV1S4		U50606
			IGHD5
			IGHJ5
6	#c	7spleen	IGHV1S6		U50608
			IGHD6
			IGHJ6
7	#c	1spleen	IGHV1S7		U50609
			IGHD7
			IGHJ7
8	#c	7RACE	IGHV1S8		U50610
			IGHD8
			IGHJ8

#c: rearranged cDNA.

See also (IMGT Scientific chart):

Created:: 31/01/2002
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table - Cassette gene content: sandbar shark (Carcharhinus plumbeus) IGH