IMGT Repertoire (IG and TR)

Gene table: sandbar shark (Carcharhinus plumbeus) IGHV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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The Sandbar shark (Carcharhinus plumbeus) IGHV genes and allele have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.
Sandbar shark (Carcharhinus plumbeus) genes are designated by a number for the subgroup followed by the letter S and a number.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHV1 IGHV1S1 IGHV1S1*01 (F) + + 4 RACE U40560 [1] #c
IGHV1S2 IGHV1S2*01 (F) + + 6 spleen U50604 [1] #c
IGHV1S3 IGHV1S3*01 (F) + + 8 RACE U50605 [1] #c
IGHV1S4 IGHV1S4*01 (F) + + 1 RACE U50606 [1] #c
IGHV1S5 IGHV1S5*01 (F) + + 2 spleen U50607 [1] #c
IGHV1S6 IGHV1S6*01 (F) + + 7 spleen U50608 [1] #c
IGHV1S7 IGHV1S7*01 (F) + + 1 spleen U50609 [1] #c
IGHV1S8 IGHV1S8*01 (F) + + 7 RACE U50610 [1] #c

#c: rearranged cDNA.

IMGT references:
  1. [1] Bernstein R.M. et al., Proc. Natl. Acad. Sci. U.S.A., 93, 3289-3293 (1996). PMID:8622930
  2. [2] Roman T. et al., Immunogenetics, 43, 325-326 (1996). PMID:9110939
Last updated:
Lorena Betancourt, Dominique Scaviner