IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name		Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name		Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain			Clone names	Accession numbers	Positions in the sequence
	IGHD1	(1)	IGHD1*01	F									AF003840	[1]
	IGHD2	(1)	IGHD2*01	F									AF003840	[1]
	IGHD3		IGHD3*01	(F)		+	+						AF003946	[1]	~VDJ
	IGHD4		IGHD4*01	(F)		+	+						AF003839	[1]	#c
	IGHD5		IGHD5*01	(F)		+	+						AF004359	[1]	#c
	IGHD6		IGHD6*01	(F)		+	+						AF004360	[1]	#c
	IGHD7		IGHD7*01	(F)		+	+						AF003853	[1]	#c
	IGHD8	(2)	IGHD8*01	F									AF003841	[1]
	IGHD9	(2)	IGHD9*01	F									AF003841	[1]
	IGHD10		IGHD10*01	(F)		+	+						AF003854	[1]	#c
	IGHD11		IGHD11*01	(F)		+	+						AF003855	[1]	#c
	IGHD12		IGHD12*01	(F)		+	+						AF003856	[1]	#c
	IGHD13		IGHD13*01	(F)		+	+						AF003857	[1]	#c
	IGHD14		IGHD14*01	(F)		+	+						AF003858	[1]	#c
	IGHD15		IGHD15*01	(F)		+	+						AF003859	[1]	#c
	IGHD16		IGHD16*01	(F)		+	+						AF003860	[1]	#c
	IGHD17		IGHD17*01	(F)		+	+						AF003861	[1]	#c

#c: rearranged cDNA.
~VDJ: VDJ genomic DNA rearranged in the cassette.

IMGT notes:

(1) IGHD1 and IGHD2 are localized on the same cassette: Cassette 1.
(2) IGHD8 and IGHD9 are localized on the same cassette: Cassette 9.

IMGT references:

[1] Rast J.P. et al., Immunogenetics, 47, 234-245 (1998). PMID:9435342

See also (IMGT Scientific chart):

Created:: 31/01/2002
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table: spotted ratfish (Hydrolagus colliei) IGHD