IMGT Repertoire (IG and TR)


Gene table: spotted ratfish (Hydrolagus colliei) IGHJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHJ1 IGHJ1*01 F AF003840 [1]
IGHJ2 IGHJ2*01 (F) + + AF003946 [1] ~VDJ
IGHJ3 IGHJ3*01 (F) + + AF003839 [1] #c
IGHJ4 IGHJ4*01 (F) + + AF004359 [1] #c
IGHJ5 IGHJ5*01 (F) + + AF004360 [1] #c
IGHJ6 IGHJ6*01 (F) + + AF003853 [1] #c
IGHJ7 IGHJ7*01 F AF003841 [1]
IGHJ8 IGHJ8*01 (F) + + AF003854 [1] #c
IGHJ9 IGHJ9*01 (F) + + AF003855 [1] #c
IGHJ10 IGHJ10*01 (F) + + AF003856 [1] #c
IGHJ11 IGHJ11*01 (F) + + AF003857 [1] #c
IGHJ12 IGHJ12*01 (F) + + AF003858 [1] #c
IGHJ13 IGHJ13*01 (F) + + AF003859 [1] #c
IGHJ14 IGHJ14*01 (F) + + AF003860 [1] #c
IGHJ15 IGHJ15*01 (F) + + AF003861 [1] #c

#c: rearranged cDNA.
~VDJ: VDJ genomic DNA rearranged in the cassette.

IMGT references:
  1. [1] Rast J.P. et al., Immunogenetics, 47, 234-245 (1998). PMID:9435342
Created:
31/01/2002
Last updated:
22/09/2023
Authors:
Dominique Scaviner