IMGT Repertoire (IG and TR)

Gene table: spotted ratfish (Hydrolagus colliei) IGIV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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The Spotted ratfish (Hydrolagus colliei) IGIV genes and allele have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.
Spotted ratfish (Hydrolagus colliei) genes are designated by a number for the subgroup followed by the letter S and a number.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIV1 IGIV1S1 IGIV1S1*01 (F) + + Hco718V L25556 [1] ~VJ
IGIV1S2 IGIV1S2*01 (F) + + Hco717V L25554 [1] ~VJ
IGIV1S3 IGIV1S3*01 (F) + + Hco702 L25549 [1] #c
IGIV1S4 IGIV1S4*01 (F) + + Hco710 L25551 [1] #c
IGIV2 IGIV2S1 IGIV2S1*01 (F) + + Hco712 L25552 [1] #c

#c: rearranged cDNA.
~VJ: VJ genomic DNA rearranged in the cassette.

IMGT references:
  1. [1] Rast J.P. et al., Immunogenetics, 40, 83-99 (1994). PMID:8026868
Last updated:
Dominique Scaviner