IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Spotted wolffish (Anarhichas minor) variable genes are designated by the locus three letter root, a number for the subgroup, followed by the letter S and a number.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence
IGHV1	IGHV1S1	IGHV1S1*01	(F)		+	+						AF138958	[1]		#c
	IGHV1S2	IGHV1S2*01	(F)		+	+				VHI		AY188780	[2]		#c
	IGHV1S3	IGHV1S3*01	(F)		+	+				VHI		AY188783	[2]		#c				VHI	AY188785	[2]	#c
	IGHV1S4	IGHV1S4*01	(F)		+	+				VHI		AY188784	[2]		#c
	IGHV1S5	IGHV1S5*01	(F)		+	+				VHI		AY188781	[2]	(1)	#c
	IGHV1S6	IGHV1S6*01	(F)		+	+				VHI		AY188788	[2]		#c
IGHV2	IGHV2S1	IGHV2S1*01	(F)		+	+				VHII		AY188782	[2]		#c
	IGHV2S2	IGHV2S2*01	(F)		+	+				VHII		AY188786	[2]		#c
	IGHV2S3	IGHV2S3*01	(F)		+	+				VHII		AY188787	[2]		#c
IGHV3	IGHV3S1	IGHV3S1*01	(F)		+	+				VHIII		AY188779	[2]		#c

#c: rearranged cDNA.

IMGT notes:

(1) Partial V-REGION: AA 1 to 3 are missing (partial FR1-IMGT).

IMGT references:

[1] Espelid S. et al., Fish Shellfish Immunol., 11, 399-413 (2001). PMID:11478516
[2] Espelid S. and Grontvedt R.N., Unpublished (2003).

See also (IMGT Scientific chart):

Created:: 08/09/1999
Last updated:: 22/09/2023
Authors:: Sylvaine Artero, Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: spotted wolffish (Anarhichas minor) IGHV