Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

Spotted wolffish (Anarhichas minor) variable genes are designated by the locus three letter root, a number for the subgroup, followed by the letter S and a number.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGHV1 IGHV1S1 IGHV1S1*01 (F) + + AF138958 [1] #c
IGHV1S2 IGHV1S2*01 (F) + + VHI AY188780 [2] #c
IGHV1S3 IGHV1S3*01 (F) + + VHI AY188783 [2] #c VHI AY188785 [2] #c
IGHV1S4 IGHV1S4*01 (F) + + VHI AY188784 [2] #c
IGHV1S5 IGHV1S5*01 (F) + + VHI AY188781 [2] (1) #c
IGHV1S6 IGHV1S6*01 (F) + + VHI AY188788 [2] #c
IGHV2 IGHV2S1 IGHV2S1*01 (F) + + VHII AY188782 [2] #c
IGHV2S2 IGHV2S2*01 (F) + + VHII AY188786 [2] #c
IGHV2S3 IGHV2S3*01 (F) + + VHII AY188787 [2] #c
IGHV3 IGHV3S1 IGHV3S1*01 (F) + + VHIII AY188779 [2] #c

#c: rearranged cDNA.

IMGT notes:
  1. (1) Partial V-REGION: AA 1 to 3 are missing (partial FR1-IMGT).
IMGT references:
  1. [1] Espelid S. et al., Fish Shellfish Immunol., 11, 399-413 (2001). PMID:11478516
  2. [2] Espelid S. and Grontvedt R.N., Unpublished (2003).
Created:
08/09/1999
Last updated:
29/06/2011
Authors:
Sylvaine Artero, Nathalie Bosc