IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

See Correspondence between nomenclatures: Teleostei IGIC

IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain			Clone names	Accession numbers	Positions in the sequence
	IGIJ1S1	IGIJ1S1*01	(F)		+	+				c1		AF137397	[1]	#c
	IGIJ1S2	IGIJ1S2*01	(F)		+	+				c10		AF137398	[1]	#c

#c: rearranged cDNA.

IMGT references:

[1] Espelid S. et al., Fish Shellfish Immunol., 11, 399-413 (2001). PMID:11478516

See also (IMGT Scientific chart):

Created:: 10/06/2003
Last updated:: 22/09/2023
Authors:: Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: spotted wolffish (Anarhichas minor) IGIJ