Citing IMGT databases: Manso T. et al. IMGT® databases, related tools and web resources through three main axes of research and development. Nucleic Acids Res. 2022 Jan 7;50(D1):D1262-D1272. doi: 10.1093/nar/gkab1136 PMID: 34875068 Free PMC article.
Program version: v. 

Addition of 'Score for IMGT allele confirmation' as well as NCBI TPA accession numbers.
September 20th, 2023.

Implementation of the dynamic gene table.

Gene table legend:

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene, when the data have been confirmed by several studies.

Functionality is shown in parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.

IMGT allele confirmation: a scoring system is employed to signify the frequency of occurrences of a specific allele within sequence data. A single star (*) indicates that no instances of the allele have been identified in the literature. Two stars (**) indicate the discovery of one literature sequence containing the allele. If more than one literature sequence is found to contain the allele, it is designated with three stars (***). In the Excel file, the stars are represented by the plus symbol (+).

Click on:
  • IMGT gene name to get the corresponding IMGT/GENE-DB entry (link).
  • IMGT allele name to see the corresponding Alignments of alleles (link).
  • Accession number to get the corresponding IMGT/LIGM-DB entry (link).
  • MAP: mapped sequences. Click to access GENE-DB «LOCALIZATION IN GENOME ASSEMBLIES» (link).
  • [number] to access the corresponding IMGT reference (popover).
  • (number) to see the corresponding IMGT note (popover).
Options:
  • You can show/hide columns (), download data () or put the table in fullscreen () using buttons.
See also (IMGT Scientific chart):
Select a species and a IMGT group to get the gene table:
Only IMGT available species/group are shown in the drop-down list.
The gene table can take several seconds to appear, please be patient.
Gene table of sumatran orangutan (Pongo abelii) IGHV IMGT group:
IMGT sub­groupIMGT gene nameIMGT allele nameFctScore for
IMGT allele
confirmation		Chromosomosal
localization		R T PrIMGT/LIGM-DB reference sequencesIMGT/LIGM-DB sequences from the literature
IsolateClone namesAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)		Secondary
accession
numbers		IsolateClone namesAccession
numbers		Positions
in the sequence
(L-V-GENE-UNIT)
or V-REGION (*)
IGHV1IGHV1-4 IGHV1-4*01 F Susie IMGT000122 [1] MAP 1011104-1011579
IGHV1IGHV1-6 IGHV1-6*01 F Susie IMGT000122 [1] MAP 993224-993700
IGHV1IGHV1-26 IGHV1-26*01 P (1) Susie IMGT000122 [1] MAP 837003->837131 *
IGHV1IGHV1-33 IGHV1-33*01 P (2) Susie IMGT000122 [1] MAP 787190-787661
IGHV1IGHV1-38 IGHV1-38*01 P (3) Susie IMGT000122 [1] MAP 755326-755802
IGHV1IGHV1-39 IGHV1-39*01 P (4) Susie IMGT000122 [1] MAP 746922-747409
IGHV1IGHV1-44 IGHV1-44*01 ORF (5) Susie IMGT000122 [1] MAP 711091-711567
IGHV1IGHV1-47 IGHV1-47*01 P (6) Susie IMGT000122 [1] MAP 692532-692822 *
IGHV1IGHV1-50 IGHV1-50*01 P (7) Susie IMGT000122 [1] MAP 670792-671266
IGHV1IGHV1-54 IGHV1-54*01 F Susie IMGT000122 [1] MAP 651802-652278
IGHV1IGHV1-68 IGHV1-68*01 P (8) Susie IMGT000122 [1] MAP 555907-556383
IGHV1IGHV1-79 IGHV1-79*01 P (9) Susie IMGT000122 [1] MAP 463918-464392
IGHV1IGHV1-80 IGHV1-80*01 ORF (10) Susie IMGT000122 [1] MAP 459789-460265
IGHV1IGHV1-98 IGHV1-98*01 ORF (11) Susie IMGT000122 [1] MAP 342964-343440
IGHV1IGHV1-103 IGHV1-103*01 F Susie IMGT000122 [1] MAP 318791-319267
IGHV1IGHV1-108 IGHV1-108*01 P (12) Susie IMGT000122 [1] MAP 294080-294554
IGHV1IGHV1-116 IGHV1-116*01 P (4) Susie IMGT000122 [1] MAP 243219-243690
IGHV1IGHV1-119 IGHV1-119*01 F Susie IMGT000122 [1] MAP 207065-207542
IGHV1IGHV1-126 IGHV1-126*01 P (13) Susie IMGT000122 [1] MAP 140301-140752
IGHV2IGHV2-8 IGHV2-8*01 P (14) Susie IMGT000122 [1] MAP 969760-970060 *
IGHV2IGHV2-48 IGHV2-48*01 F Susie IMGT000122 [1] MAP 683570-684052
IGHV2IGHV2-117 IGHV2-117*01 F Susie IMGT000122 [1] MAP 234300-234782
IGHV2IGHV2-120 IGHV2-120*01 F Susie IMGT000122 [1] MAP 198023-198505
IGHV2IGHV2-132 IGHV2-132*01 F Susie IMGT000122 [1] MAP 63074-63556
IGHV3IGHV3-11 IGHV3-11*01 P (15) Susie IMGT000122 [1] MAP 951841-952335
IGHV3IGHV3-12 IGHV3-12*01 P (16) Susie IMGT000122 [1] MAP 945256-945749
IGHV3IGHV3-13 IGHV3-13*01 F Susie IMGT000122 [1] MAP 928453-928949
IGHV3IGHV3-15 IGHV3-15*01 P (17) Susie IMGT000122 [1] MAP 919709-920195
IGHV3IGHV3-16 IGHV3-16*01 F Susie IMGT000122 [1] MAP 914446-914936
IGHV3IGHV3-21 IGHV3-21*01 P (18) Susie IMGT000122 [1] MAP 885841-886335
IGHV3IGHV3-22 IGHV3-22*01 F Susie IMGT000122 [1] MAP 871686-872180
IGHV3IGHV3-23 IGHV3-23*01 P (19) Susie IMGT000122 [1] MAP 855119-855618
IGHV3IGHV3-25 IGHV3-25*01 F Susie IMGT000122 [1] MAP 846912-847406
IGHV3IGHV3-27 IGHV3-27*01 F Susie IMGT000122 [1] MAP 817600-818084
IGHV3IGHV3-31 IGHV3-31*01 F Susie IMGT000122 [1] MAP 803900-804391
IGHV3IGHV3-34 IGHV3-34*01 F Susie IMGT000122 [1] MAP 776246-776746
IGHV3IGHV3-36 IGHV3-36*01 ORF (20) Susie IMGT000122 [1] MAP 764555-765046
IGHV3IGHV3-40 IGHV3-40*01 F Susie IMGT000122 [1] MAP 730097-730597
IGHV3IGHV3-43 IGHV3-43*01 F Susie IMGT000122 [1] MAP 718995-719492
IGHV3IGHV3-45 IGHV3-45*01 P (21) Susie IMGT000122 [1] MAP 698571-699065
IGHV3IGHV3-49 IGHV3-49*01 P (22) Susie IMGT000122 [1] MAP 675446-675917
IGHV3IGHV3-57 IGHV3-57*01 P (23) Susie IMGT000122 [1] MAP 631676-632172
IGHV3IGHV3-58 IGHV3-58*01 F Susie IMGT000122 [1] MAP 627986-628479
IGHV3IGHV3-60 IGHV3-60*01 P (21) Susie IMGT000122 [1] MAP 617133-617618
IGHV3IGHV3-63 IGHV3-63*01 F Susie IMGT000122 [1] MAP 594855-595349
IGHV3IGHV3-64 IGHV3-64*01 P (24) Susie IMGT000122 [1] MAP 591559->591861 *
IGHV3IGHV3-65 IGHV3-65*01 P (25) Susie IMGT000122 [1] MAP 587647->587950 *
IGHV3IGHV3-66 IGHV3-66*01 F Susie IMGT000122 [1] MAP 573565-574056
IGHV3IGHV3-72 IGHV3-72*01 P (26) Susie IMGT000122 [1] MAP 527537-528031
IGHV3IGHV3-73 IGHV3-73*01 P (27) Susie IMGT000122 [1] MAP 507489-507967
IGHV3IGHV3-74 IGHV3-74*01 P (28) Susie IMGT000122 [1] MAP 500557-501053
IGHV3IGHV3-82 IGHV3-82*01 F Susie IMGT000122 [1] MAP 452207-452697
IGHV3IGHV3-84 IGHV3-84*01 F Susie IMGT000122 [1] MAP 431305-431799
IGHV3IGHV3-85 IGHV3-85*01 F Susie IMGT000122 [1] MAP 412085-412585
IGHV3IGHV3-87 IGHV3-87*01 P (29) Susie IMGT000122 [1] MAP 402944-403439
IGHV3IGHV3-91 IGHV3-91*01 P (30) Susie IMGT000122 [1] MAP 381702-382191
IGHV3IGHV3-92 IGHV3-92*01 F Susie IMGT000122 [1] MAP 373306-373798
IGHV3IGHV3-94 IGHV3-94*01 P (31) Susie IMGT000122 [1] MAP 363607-364094
IGHV3IGHV3-100 IGHV3-100*01 P (3) Susie IMGT000122 [1] MAP 335267-335757
IGHV3IGHV3-102 IGHV3-102*01 P (32) Susie IMGT000122 [1] MAP 322376-322669 *
IGHV3IGHV3-105 IGHV3-105*01 P (33) Susie IMGT000122 [1] MAP 310996-311487
IGHV3IGHV3-110 IGHV3-110*01 P (34) Susie IMGT000122 [1] MAP 285293-285788
IGHV3IGHV3-112 IGHV3-112*01 P (35) Susie IMGT000122 [1] MAP 276767-277261
IGHV3IGHV3-113 IGHV3-113*01 F Susie IMGT000122 [1] MAP 271364-271851
IGHV3IGHV3-115 IGHV3-115*01 P (36) Susie IMGT000122 [1] MAP 260825-261321
IGHV3IGHV3-118 IGHV3-118*01 F Susie IMGT000122 [1] MAP 229687-230181
IGHV3IGHV3-121 IGHV3-121*01 F Susie IMGT000122 [1] MAP 193415-193912
IGHV3IGHV3-122 IGHV3-122*01 F Susie IMGT000122 [1] MAP 180827-181327
IGHV3IGHV3-123 IGHV3-123*01 P (37) Susie IMGT000122 [1] MAP 168989-169483
IGHV3IGHV3-124 IGHV3-124*01 F Susie IMGT000122 [1] MAP 152724-153224
IGHV3IGHV3-125 IGHV3-125*01 F Susie IMGT000122 [1] MAP 145013-145515
IGHV3IGHV3-127 IGHV3-127*01 P (38) Susie IMGT000122 [1] MAP 126736-127227
IGHV3IGHV3-128 IGHV3-128*01 P (39) Susie IMGT000122 [1] MAP 121528-122028
IGHV3IGHV3-129 IGHV3-129*01 F Susie IMGT000122 [1] MAP 103835-104328
IGHV3IGHV3-131 IGHV3-131*01 F Susie IMGT000122 [1] MAP 85466-85959
IGHV3IGHV3-133 IGHV3-133*01 F Susie IMGT000122 [1] MAP 52735-53235
IGHV3IGHV3-134 IGHV3-134*01 F Susie IMGT000122 [1] MAP 40669-41169
IGHV3IGHV3-135 IGHV3-135*01 F Susie IMGT000122 [1] MAP 33005-33499
IGHV3IGHV3-137 IGHV3-137*01 P (40) Susie IMGT000122 [1] MAP 17803-18310
IGHV3IGHV3-138 IGHV3-138*01 P (41) Susie IMGT000122 [1] MAP 13949-14434
IGHV4IGHV4-7 IGHV4-7*01 F Susie IMGT000122 [1] MAP 986345-986818
IGHV4IGHV4-55 IGHV4-55*01 F Susie IMGT000122 [1] MAP 638612-639086
IGHV4IGHV4-61 IGHV4-61*01 F Susie IMGT000122 [1] MAP 612595-613066
IGHV4IGHV4-69 IGHV4-69*01 F Susie IMGT000122 [1] MAP 549337-549808
IGHV4IGHV4-95 IGHV4-95*01 F Susie IMGT000122 [1] MAP 358957-359427
IGHV4IGHV4-99 IGHV4-99*01 F Susie IMGT000122 [1] MAP 338165-338635
IGHV4IGHV4-101 IGHV4-101*01 F Susie IMGT000122 [1] MAP 330870-331336
IGHV4IGHV4-104 IGHV4-104*01 P (42) Susie IMGT000122 [1] MAP 313911-314384
IGHV4IGHV4-106 IGHV4-106*01 F Susie IMGT000122 [1] MAP 306527-306990
IGHV4IGHV4-109 IGHV4-109*01 F Susie IMGT000122 [1] MAP 289260-289730
IGHV5IGHV5-18 IGHV5-18*01 F Susie IMGT000122 [1] MAP 894381-894852
IGHV5IGHV5-88 IGHV5-88*01 ORF (43) Susie IMGT000122 [1] MAP 389385-389858
IGHV7IGHV7-52 IGHV7-52*01 F Susie IMGT000122 [1] MAP 659790-660265
IGHV7IGHV7-62 IGHV7-62*01 P (44) Susie IMGT000122 [1] MAP 608955-609427
IGHV7IGHV7-70 IGHV7-70*01 P (45) Susie IMGT000122 [1] MAP <545936-546138 *
IGHV7IGHV7-96 IGHV7-96*01 P (15) Susie IMGT000122 [1] MAP 355324-355796
IGHV8IGHV8-19 IGHV8-19*01 P (46) Susie IMGT000122 [1] MAP 888567-889161
IGHV8IGHV8-89 IGHV8-89*01 P (47) Susie IMGT000122 [1] MAP 384439-385088
IMGT notes: ↑
  1. partial in 3', no V-RS
  2. STOP-CODON in L-PART1, frameshifts in V-REGION: deletion of 1 nt and deletion of 1 nt in FR1-IMGT
  3. frameshift in V-REGION: deletion of 1 nt in FR2-IMGT
  4. frameshift in L-PART1
  5. noncanonical DONOR-SPLICE: ngc instead of ngt
  6. no INIT-CODON: Arg instead of Met, frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  7. STOP-CODON in V-REGION: position 43
  8. no INIT-CODON: Val instead of Met
  9. frameshift in V-REGION: deletion of 2 nt in FR2-IMGT
  10. no 2nd-CYS: Tyr instead of Cys
  11. no 1st-CYS:Phe instead of Cys, no 2nd-CYS: Ser instead of Cys
  12. STOP-CODON in V-REGION: position 43, frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  13. frameshifts in V-REGION: deletion of 1 nt and deletion of 13 nt in FR1-IMGT
  14. no V-NONAMER
  15. frameshifts in V-REGION: several insertions and deletions
  16. STOP-CODON in V-REGION: position 97
  17. STOP-CODON in L-PART1, STOP-CODON in V-REGION: position 38
  18. STOP-CODON in V-REGION: position 75, frameshifts in V-REGION: several insertions and deletions
  19. no INIT-CODON: Thr instead of Met, no DONOR-SPLICE
  20. noncanonical DONOR-SPLICE: nat instead of ngt, noncanonical V-HEPTAMER: tcctgtg instead of cacagtg
  21. several STOP-CODON in V-REGION
  22. frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshifts in V-REGION: several insertions and deletions
  23. STOP-CODON in L-PART1, several STOP-CODON in V-REGION, no CONSERVED-TRP: STOP-CODON instead of Trp
  24. frameshifts in V-REGION: several insertions and deletions, STOP-CODON in V-REGION: position 97, no V-RS
  25. frameshifts in V-REGION: several insertions and deletions, no V-RS
  26. frameshift in V-REGION: insertion of 2 nt in FR1-IMGT
  27. STOP-CODON in L-PART1
  28. STOP-CODON in V-REGION: position 75
  29. no INIT-CODON: Val instead of Met, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  30. STOP-CODON in V-REGION: position 9
  31. frameshift in V-REGION: insertion of 1 nt in FR1-IMGT
  32. frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  33. STOP-CODON in V-REGION: position 48
  34. frameshift in V-REGION: insertion of 4 nt in FR1-IMGT
  35. STOP-CODON in L-PART1, several STOP-CODON in V-REGION, frameshift in V-REGION: deletion of 2 nt in FR3-IMGT
  36. STOP-CODON in V-REGION: position 38
  37. no INIT-CODON: Thr instead of Met
  38. frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  39. STOP-CODON in V-REGION: position 37
  40. no DONOR-SPLICE, frameshift in V-REGION: insertion of 13 nt in FR1-IMGT
  41. several STOP-CODON in V-REGION, no CONSERVED-TRP: STOP-CODON instead of Trp, frameshift in V-REGION: deletion of 2 nt in FR2-IMGT
  42. frameshift in V-REGION: insertion of 5 nt in FR3-IMGT
  43. noncanonical V-NONAMER: tctaaaacc instead of acacaaacc
  44. STOP-CODON in L-PART1, several STOP-CODON in V-REGION
  45. no L-PART1, no L-PART2, STOP-CODON in V-REGION: position 43
  46. no INIT-CODON: Ile instead of Met, frameshifts in V-REGION: deletion of 1 nt and deletion of 64 nt in FR2-IMGT
  47. no INIT-CODON: Ile instead of Met
IMGT references: ↑
  1. Pollen,A. et al., High-resolution comparative analysis of great ape genomes, Unpublished.