Here you are: IMGT Web resources > IMGT Repertoire (IG and TR) > 1. Locus and genes

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence (J-REGION) Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence (J-REGION)
TRAJ1 TRAJ1*01 F 7001-7800 FTCRAJ01 AF110525 [1] 7152-7214
TRAJ2 TRAJ2*01 F 6501-7000 FTCRAJ02 AF110525 [1] 6589-6648
TRAJ3 TRAJ3*01 F 6001-6500 FTCRAJ03 AF110525 [1] 6271-6333
TRAJ4 TRAJ4*01 F 5201-6000 FTCRAJ04 AF110525 [1] 5324-5383
TRAJ5 TRAJ5*01 F 4501-5200 FTCRAJ05 AF110525 [1] 5000-5062
TRAJ6 TRAJ6*01 ORF (1) 3961-4500 FTCRAJ06 AF110525 [1] 4108-4168
TRAJ7 TRAJ7*01 F 3701-3960 FTCRAJ07 AF110525 [1] 3851-3913
TRAJ8 TRAJ8*01 F 3401-3700 FTCRAJ08 AF110525 [1] 3593-3654
TRAJ9 TRAJ9*01 F 2901-3400 FTCRAJ09 AF110525 [1] 3090-3149
TRAJ10 TRAJ10*01 F 2601-2900 FTCRAJ10 AF110525 [1] 2816-1878
TRAJ11 TRAJ11*01 P (2) 2201-2600 FTCRAJ11 AF110525 [1] 2413-2464
TRAJ12 TRAJ12*01 P (3) 1801-2200 FTCRAJ12 AF110525 [1] 2018-2075
TRAJ13 TRAJ13*01 F 1201-1800 FTCRAJ13 AF110525 [1] 1615-1677
TRAJ14 TRAJ14*01 F 361-1200 FTCRAJ14 AF110525 [1] 492-551
TRAJ15 TRAJ15*01 F 1-360 FTCRAJ15 AF110525 [1] 218-280
IMGT notes:
  1. (1) Non canonical J-REGION: Phe-Ala-X-Gly instead of Phe-Gly-X-Gly.
  2. (2) Pseudogene because one STOP-CODON in J-REGION.
  3. (3) Pseudogene because two STOP-CODONs in J-REGION.
IMGT references:
  1. [1] Wang K. et al., Immunogenetics, 53, 31-42 (2001). PMID:11261928
Created:
27/06/2003
Last updated:
29/06/2011
Authors:
Nathalie Bosc