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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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The Torafugu (Takifugu rubripes) IGHV genes and alleles have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
TRAV1 TRAV1S1 TRAV1S1*01 F AF110525 [1] FTCRAV1S1 AF269195 [1]
TRAV1S2 TRAV1S2*01 F AF110525 [1] FTCRAV1S2 AF269196 [1]
TRAV1S3 TRAV1S3*01 F AF110526 [1] FTCRAV1S3 AF269197 [1]
TRAV1S4 TRAV1S4*01 F AF110526 [1] FTCRAV1S4 AF269198 [1]
TRAV1S5 TRAV1S5*01 F AF110526 [1] FTCRAV1S5 AF269199 [1]
TRAV1S6 TRAV1S6*01 F FTCRAV1S6 AF269200 [1]
TRAV1S7 TRAV1S7*01 (F) + + FTCRAV1S7 AF269222 [1] #c
TRAV2 TRAV2S1 TRAV2S1*01 F FTCRAV2S1 AF269201 [1]
TRAV2S2 TRAV2S2*01 F FTCRAV2S2 AF269202 [1]
TRAV2S3 TRAV2S3*01 F FTCRAV2S3 AF269203 [1]
TRAV3 TRAV3S1 TRAV3S1*01 F AF110525 [1] FTCRAV3S1 AF269204 [1]
TRAV3S2 TRAV3S2*01 F AF110526 [1] FTCRAV3S2 AF269205 [1]
TRAV3S3 TRAV3S3*01 F AF110526 [1] FTCRAV3S3 AF269206 [1]
TRAV3S4 TRAV3S4*01 F FTCRAV3S4 AF269207 [1]
TRAV3S5 TRAV3S5*01 F FTCRAV3S5 AF269208 [1]
TRAV4 TRAV4S1 TRAV4S1*01 F AF110525 [1] FTCRAV4S1 AF269209 [1]
TRAV4S2 TRAV4S2*01 F AF110526 [1] FTCRAV4S2 AF269210 [1]
TRAV4S3 TRAV4S3*01 F AF110526 [1] FTCRAV4S3 AF269211 [1]

#c: rearranged cDNA.

IMGT references:
  1. [1] Wang K. et al., Immunogenetics, 53, 31-42 (2001). PMID:11261928
Last updated:
Nathalie Bosc