IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct		Chromosomal localization	R	T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct		Chromosomal localization	R	T	Pr	Isolate	Clone names	Accession numbers	Positions in the sequence (D-GENE-UNIT)	Secondary accession numbers		Isolate		Clone names	Accession numbers	Positions in the sequence (D-GENE-UNIT)
IGHD1	IGHD1-1	IGHD1-1*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	944758..944830				LT578329.1	IMGT000078	MAP	1084303..1084375
	IGHD1-5-2	IGHD1-5-2*01	ORF	(4)		14					LT578329.1		IMGT000078	MAP	1094081..1094153
	IGHD1-7	IGHD1-7*01	F			14					LT578329.1		IMGT000078	MAP	1103470..1103541
	IGHD1-14	IGHD1-14*01	ORF	(9)		14					LT578329.1		IMGT000078	MAP	1112909..1112980
	IGHD1-20	IGHD1-20*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	982544..982616				LT578329.1	IMGT000078	MAP	1122448..1122520
	IGHD1-26	IGHD1-26*01	ORF	(8)		14				Kamilah	CM017861.1		IMGT000074	MAP	992752..992826				LT578329.1	IMGT000078	MAP	1132598..1132672
IGHD2	IGHD2-2	IGHD2-2*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	947429..947515				LT578329.1	IMGT000078	MAP	1086972..1087058
	IGHD2-5-3	IGHD2-5-3*01	F			14					LT578329.1		IMGT000078	MAP	1096756..1096842
	IGHD2-8	IGHD2-8*01	F			14					LT578329.1		IMGT000078	MAP	1106393..1106479
	IGHD2-15	IGHD2-15*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	975767..975853				LT578329.1	IMGT000078	MAP	1115600..1115686
	IGHD2-21	IGHD2-21*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	985267..985350				LT578329.1	IMGT000078	MAP	1125160..1125243
IGHD3	IGHD3-3	IGHD3-3*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	949888..949974				LT578329.1	IMGT000078	MAP	1089428..1089514
	IGHD3-5-4	IGHD3-5-4*01	F			14					LT578329.1		IMGT000078	MAP	1099030..1099116
	IGHD3-9	IGHD3-10*01	F			14					LT578329.1		IMGT000078	MAP	1108806..1108892
	IGHD3-16	IGHD3-16*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	978053..978144
	IGHD3-16	IGHD3-16*02	ORF	(10)		14					LT578329.1		IMGT000078	MAP	1117967..1118059
	IGHD3-22	IGHD3-22*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	987691..987777
	IGHD3-22	IGHD3-22*02	F			14					LT578329.1		IMGT000078	MAP	1127562..1127648
IGHD4	IGHD4-4	IGHD4-4*01	ORF	(1)		14				Kamilah	CM017861.1		IMGT000074	MAP	951036..951107				LT578329.1	IMGT000078	MAP	1090576..1090647
	IGHD4-5-5	IGHD4-5-5*01	ORF	(5)		14					LT578329.1		IMGT000078	MAP	1100166..1100237
	IGHD4-11	IGHD4-11*01	ORF	(6)		14					LT578329.1		IMGT000078	MAP	1109937..1110008
	IGHD4-17	IGHD4-17*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	979200..979271				LT578329.1	IMGT000078	MAP	1119109..1119180
	IGHD4-23	IGHD4-23*01	ORF	(6)		14				Kamilah	CM017861.1		IMGT000074	MAP	988878..988952
	IGHD4-23	IGHD4-23*02	ORF	(6)		14					LT578329.1		IMGT000078	MAP	1128738..1128812
IGHD5	IGHD5-5	IGHD5-5*01	ORF	(2)		14				Kamilah	CM017861.1		IMGT000074	MAP	952000..952078				LT578329.1	IMGT000078	MAP	1091540..1091618
	IGHD5-5-6	IGHD5-5-6*01	F			14					LT578329.1		IMGT000078	MAP	1101118..1101195
	IGHD5-12	IGHD5-12*01	F			14					LT578329.1		IMGT000078	MAP	1110893..1110971
	IGHD5-18	IGHD5-18*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	980166..980241
	IGHD5-18	IGHD5-18*02	F			14					LT578329.1		IMGT000078	MAP	1120073..1120151
	IGHD5-24	IGHD5-24*01	ORF	(7)		14				Kamilah	CM017861.1		IMGT000074	MAP	989845..989920				LT578329.1	IMGT000078	MAP	1129704..1129779
IGHD6	IGHD6-5-1	IGHD6-5-1*01	P	(3)		14					LT578329.1		IMGT000078	MAP	1093936..1093954	(11)
	IGHD6-6	IGHD6-6*01	F			14					LT578329.1		IMGT000078	MAP	1102966..1103039
	IGHD6-13	IGHD6-13*01	F			14					LT578329.1		IMGT000078	MAP	1112403..1112479
	IGHD6-19	IGHD6-19*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	982029..982105				LT578329.1	IMGT000078	MAP	1121940..1122016
	IGHD6-25	IGHD6-25*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	992210..992283				LT578329.1	IMGT000078	MAP	1132064..1132137
IGHD7	IGHD7-27	IGHD7-27*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	1008654..1008664				LT578329.1	IMGT000078	MAP	1148310..1148376

MAP: mapped sequences.

IMGT notes:

(1) noncanonical 3'D-NONAMER: gcagaaact instead of acaaaaacc
(2) noncanonical 5'D-NONAMER: ggttatcat instead of ggtttttgt
(3) no 3'D-RS
(4) noncanonical 3'D-HEPTAMER: ctccatg instead of cacagtg
(5) noncanonical 5'D-HEPTAMER: ctatgtg instead of cactgtg, noncanonical 5'D-NONAMER: tttttgtga instead of ggtttctga
(6) noncanonical 5'D-HEPTAMER: tgctgtg instead of cactgtg
(7) noncanonical 5'D-HEPTAMER: ggccgtg instead of cactgtg
(8) noncanonical 5'D-HEPTAMER: catggtg instead of cactgtg
(9) noncanonical 3'D-HEPTAMER: ccactgt instead of cacagtg, noncanonical 3'D-NONAMER: gtcaaaaac instead of acaaaaacc
(10) noncanonical 3'D-HEPTAMER: cacagca instead of cacagtg
(11) position of D-REGION

More information:

See also (IMGT Scientific chart):

Created:: 03/12/2021
Last updated:: 13/12/2022
Authors:: Chahrazed Debbagh

IMGT Repertoire (IG and TR)

Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGHD