IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Isolate	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Isolate		Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	IGHJ1	IGHJ1*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	1008718..1008807			LT578329.1	IMGT000078	MAP	1148402..1148491
	IGHJ1P	IGHJ1P*01	P	(1)		14				Kamilah	CM017861.1		IMGT000074	MAP	1008501..1008591
	IGHJ1P	IGHJ1P*02	P	(1)		14					LT578329.1		IMGT000078	MAP	1148185..1148275
	IGHJ2	IGHJ2*01	P	(1)		14					LT578329.1		IMGT000078	MAP	1148587..1148673
	IGHJ2P	IGHJ2P*01	ORF	(2)		14				Kamilah	CM017861.1		IMGT000074	MAP	1009116..1009206
	IGHJ2P	IGHJ2P*02	ORF	(2)		14					LT578329.1		IMGT000078	MAP	1148982..1149072
	IGHJ3	IGHJ3*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	1009331..1009419
	IGHJ3	IGHJ3*02	F			14					LT578329.1		IMGT000078	MAP	1149197..1149285
	IGHJ3P	IGHJ3P*01	P	(1)		14				Kamilah	CM017861.1		IMGT000074	MAP	1010486..1010573
	IGHJ3P	IGHJ3P*02	P	(1)		14					LT578329.1		IMGT000078	MAP	1150355..1150441
	IGHJ4	IGHJ4*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	1009691..1009777
	IGHJ4	IGHJ4*02	F			14					LT578329.1		IMGT000078	MAP	1149557..1149643
	IGHJ5	IGHJ5*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	1010091..1010179			LT578329.1	IMGT000078	MAP	1149957..1150045
	IGHJ6	IGHJ6*01	F			14				Kamilah	CM017861.1		IMGT000074	MAP	1010691..1010791
	IGHJ6	IGHJ6*02	F			14					LT578329.1		IMGT000078	MAP	1150559..1150659

IMGT notes:

(1) frameshift in J-REGION
(2) noncanonical DONOR-SPLICE: nga instead of ngt, noncanonical J-HEPTAMER: tagtgtg instead of cactgtg, noncanonical J-NONAMER: tgttcatgt instead of ggtttttgt

More information:

See also (IMGT Scientific chart):

Created:: 03/12/2021
Last updated:: 13/12/2022
Authors:: Chahrazed Debbagh

IMGT Repertoire (IG and TR)

Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGHJ