IMGT Repertoire (IG and TR)


Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGKV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)		 Secondary accession numbers Isolate Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
IGKV1 IGKV1-5 IGKV1-5*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 795342..795847
IGKV1-5*02 P (1) 2A LT578338.1 IMGT000089 MAP 598955..599454
IGKV1-5*03 F 2A KB3781 CM054583.1 IMGT000137 MAP 1275959..1276464
IGKV1-5*04 F 2A KB3781 CM054559.1 IMGT000138 MAP 795998..796503
IGKV1-6 IGKV1-6*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 776367..776873 LT578338.1 IMGT000089 MAP 580025..580531
KB3781 CM054583.1 IMGT000137 MAP 1256983..1257489
IGKV1-6*02 F 2A KB3781 CM054559.1 IMGT000138 MAP 777023..777528
IGKV1-8 IGKV1-8*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 749968..750473 LT578338.1 IMGT000089 MAP 553668..554173
IGKV1-8*02 F 2A KB3781 CM054583.1 IMGT000137 MAP 1230600..1231105 KB3781 CM054559.1 IMGT000138 MAP 750637..751142
IGKV1-12 IGKV1-12*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 682280..682784 LT578338.1 IMGT000089 MAP 485983..486487
IGKV1-12*02 F 2A KB3781 CM054583.1 IMGT000137 MAP 1162802..1163308
IGKV1-12*03 F 2A KB3781 CM054559.1 IMGT000138 MAP 682945..683449
IGKV1-13 IGKV1-13*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 676516..677025
IGKV1-13*02 F 2A LT578338.1 IMGT000089 MAP 480198..480707 KB3781 CM054559.1 IMGT000138 MAP 677150..677659
IGKV1-13*03 F 2A KB3781 CM054583.1 IMGT000137 MAP 1157039..1157545
IGKV1-16 IGKV1-16*01 F 2A KB3781 CM054583.1 IMGT000137 MAP 1103259..1103764
IGKV1-17 IGKV1-17*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 622529..623034 LT578338.1 IMGT000089 MAP 426112..426617
KB3781 CM054559.1 IMGT000138 MAP 622951..623456
IGKV1-17*02 F 2A KB3781 CM054583.1 IMGT000137 MAP 1086996..1087501
IGKV1-22 IGKV1-22*01 P (3) 2A Kamilah CM017848.1 IMGT000077 MAP 550099..550592 LT578338.1 IMGT000089 MAP 353667..354160
KB3781 CM054583.1 IMGT000137 MAP 1014545..1015038
CM054559.1 IMGT000138 MAP 550483..550976
IGKV1-32 IGKV1-32*01 P (4) 2A Kamilah CM017848.1 IMGT000077 MAP 142015..142307 (16)
IGKV1-32*02 P (4) 2A LT578338.1 IMGT000089 MAP 141556..141848 (16)
IGKV1-32*03 P (30) 2A KB3781 CM054583.1 IMGT000137 MAP 142018..142310 (16)
IGKV1-32*04 P (30) 2A KB3781 CM054559.1 IMGT000138 MAP 142152..142444 (16)
IGKV1-33 IGKV1-33*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 127661..128165 LT578338.1 IMGT000089 MAP 127239..127743
KB3781 CM054583.1 IMGT000137 MAP 127663..128167
IGKV1-33*02 F 2A KB3781 CM054559.1 IMGT000138 MAP 127453..127957
IGKV1-35 IGKV1-35*01 P (5) 2A Kamilah CM017848.1 IMGT000077 MAP 106560..107063 KB3781 CM054583.1 IMGT000137 MAP 106539..107042
CM054559.1 IMGT000138 MAP 106371..106874
IGKV1-35*02 P (5) 2A LT578338.1 IMGT000089 MAP 106144..106647
IGKV1-37 IGKV1-37*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 95988..96496 LT578338.1 IMGT000089 MAP 95560..96068
KB3781 CM054583.1 IMGT000137 MAP 95954..96462
IGKV1-37*02 F 2A KB3781 CM054559.1 IMGT000138 MAP 95800..96308
IGKV1-39 IGKV1-39*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 77376..77880 LT578338.1 IMGT000089 MAP 76958..77462
KB3781 CM054583.1 IMGT000137 MAP 77337..77841
CM054559.1 IMGT000138 MAP 77207..77711
IGKV1-42 IGKV1-42*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 712577..713073 KB3781 CM054583.1 IMGT000137 MAP 1193156..1193652
IGKV1-42*02 P (29) 2A LT578338.1 IMGT000089 MAP 516234..516729
IGKV1-42*03 F 2A KB3781 CM054559.1 IMGT000138 MAP 713192..713688
IGKV1-43 IGKV1-43*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 732408..732913
IGKV1-43*02 F 2A LT578338.1 IMGT000089 MAP 536075..536580
IGKV1-43*03 F 2A KB3781 CM054583.1 IMGT000137 MAP 1213000..1213505
IGKV1-43*04 F 2A KB3781 CM054559.1 IMGT000138 MAP 733032..733537
IGKV1-44 IGKV1-44*01 ORF (6) 2A Kamilah CM017848.1 IMGT000077 MAP 49193..49693 KB3781 CM054583.1 IMGT000137 MAP 49170..49670
CM054559.1 IMGT000138 MAP 49181..49681
IGKV1-44*02 P (7) 2A LT578338.1 IMGT000089 MAP 49096..49599
IGKV1-49 IGKV1-49*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 9811..10315 KB3781 CM054583.1 IMGT000137 MAP 9811..10315
IGKV1-49*02 F 2A LT578338.1 IMGT000089 MAP 9811..10315
IGKV1-49*03 F 2A KB3781 CM054559.1 IMGT000138 MAP 9811..10315
IGKV2 IGKV2-4 IGKV2-4*01 P (8) 2A Kamilah CM017848.1 IMGT000077 MAP 810764..811521
IGKV2-4*02 P (9) 2A LT578338.1 IMGT000089 MAP 616079..616835
IGKV2-4*03 P (31) 2A KB3781 CM054583.1 IMGT000137 MAP 1291371..1292128 KB3781 CM054559.1 IMGT000138 MAP 811418..812175
IGKV2-10 IGKV2-10*01 P (10) 2A Kamilah CM017848.1 IMGT000077 MAP 702264..703057 KB3781 CM054583.1 IMGT000137 MAP 1182843..1183636
IGKV2-10*02 P (11) 2A LT578338.1 IMGT000089 MAP 505943..506734
IGKV2-10*03 P (10) 2A KB3781 CM054559.1 IMGT000138 MAP 702898..703691
IGKV2-14 IGKV2-14*01 P (12) 2A Kamilah CM017848.1 IMGT000077 MAP 644101..644888 LT578338.1 IMGT000089 MAP 447681..448465 (13)
KB3781 CM054559.1 IMGT000138 MAP 644518..645305
IGKV2-14*02 P (5) 2A KB3781 CM054583.1 IMGT000137 MAP 1124804..1125591
IGKV2-18 IGKV2-18*01 P (14) 2A Kamilah CM017848.1 IMGT000077 MAP 593102..593908 LT578338.1 IMGT000089 MAP 396679..397485
KB3781 CM054559.1 IMGT000138 MAP 593528..594334
IGKV2-18*02 P (14) 2A KB3781 CM054583.1 IMGT000137 MAP 1057557..1058363
IGKV2-19 IGKV2-19*01 P (15) 2A Kamilah CM017848.1 IMGT000077 MAP <587335..587575 (16) LT578338.1 IMGT000089 MAP <390912..391152 (16)
KB3781 CM054559.1 IMGT000138 MAP <587761..588001 (16)
IGKV2-19*02 P (15) 2A KB3781 CM054583.1 IMGT000137 MAP <1051792..1052032 (16)
IGKV2-23 IGKV2-23*01 P (17) 2A Kamilah CM017848.1 IMGT000077 MAP 548772..>548972 (16) LT578338.1 IMGT000089 MAP 352340..>352540 (16)
KB3781 CM054583.1 IMGT000137 MAP 1013218..>1013418 (16)
CM054559.1 IMGT000138 MAP 549156..>549356 (16)
IGKV2-24 IGKV2-24*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 544205..545024 LT578338.1 IMGT000089 MAP 347772..348591
KB3781 CM054583.1 IMGT000137 MAP 1008650..1009469
CM054559.1 IMGT000138 MAP 544590..545409
IGKV2-29 IGKV2-29*01 P (18) 2A Kamilah CM017848.1 IMGT000077 MAP 160850..161596
IGKV2-29*02 F 2A KB3781 CM054583.1 IMGT000137 MAP 160928..161685
IGKV2-29*03 F 2A KB3781 CM054559.1 IMGT000138 MAP 161065..161822
IGKV2-30 IGKV2-30*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 150277..151088 KB3781 CM054583.1 IMGT000137 MAP 150285..151096
CM054559.1 IMGT000138 MAP 150420..151231
IGKV2-36 IGKV2-36*01 P (19) 2A Kamilah CM017848.1 IMGT000077 MAP <98287..>98508 (16) LT578338.1 IMGT000089 MAP <97874..>98095 (16)
KB3781 CM054583.1 IMGT000137 MAP <98268..>98489 (16)
IGKV2-36*02 P (19) 2A KB3781 CM054559.1 IMGT000138 MAP <98100..>98321 (16)
IGKV2-38 IGKV2-38*01 P (20) 2A Kamilah CM017848.1 IMGT000077 MAP 87329..87630 (16) KB3781 CM054583.1 IMGT000137 MAP 87295..87596 (16)
CM054559.1 IMGT000138 MAP 87157..87458 (16)
IGKV2-38*02 P (20) 2A LT578338.1 IMGT000089 MAP 86905..87206 (16)
IGKV2-40 IGKV2-40*01 P (5) 2A Kamilah CM017848.1 IMGT000077 MAP 66644..67406
IGKV2-40*02 F 2A LT578338.1 IMGT000089 MAP 66244..67008 KB3781 CM054583.1 IMGT000137 MAP 66618..67382
IGKV2-40*03 F 2A KB3781 CM054559.1 IMGT000138 MAP 66488..67252
IGKV2-45 IGKV2-45*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 38854..39710
IGKV2-45*02 P (22) 2A LT578338.1 IMGT000089 MAP 38831..39683 KB3781 CM054583.1 IMGT000137 MAP 38832..39688
CM054559.1 IMGT000138 MAP 38836..39692
IGKV2-46 IGKV2-46*01 ORF (23) 2A Kamilah CM017848.1 IMGT000077 MAP 26685..27451 LT578338.1 IMGT000089 MAP 26676..27442
KB3781 CM054583.1 IMGT000137 MAP 26672..27438
CM054559.1 IMGT000138 MAP 26677..27443
IGKV2-47 IGKV2-47*01 P (24) 2A Kamilah CM017848.1 IMGT000077 MAP 18724..19493 LT578338.1 IMGT000089 MAP 18720..19489
KB3781 CM054583.1 IMGT000137 MAP 18718..19486
CM054559.1 IMGT000138 MAP 18726..19494
IGKV3 IGKV3-7 IGKV3-7*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 763879..764422 LT578338.1 IMGT000089 MAP 567549..568091
IGKV3-7*02 F 2A KB3781 CM054583.1 IMGT000137 MAP 1244488..1245031 KB3781 CM054559.1 IMGT000138 MAP 764522..765065
IGKV3-11 IGKV3-11*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 695285..695828 LT578338.1 IMGT000089 MAP 498969..499511
KB3781 CM054583.1 IMGT000137 MAP 1175866..1176409
CM054559.1 IMGT000138 MAP 695919..696462
IGKV3-15 IGKV3-15*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 637151..637694 KB3781 CM054559.1 IMGT000138 MAP 637571..638114
IGKV3-15*02 F 2A LT578338.1 IMGT000089 MAP 440735..441278
KB3781 CM054583.1 IMGT000137 MAP 1117855..1118398
IGKV3-20 IGKV3-20*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 579480..580044 LT578338.1 IMGT000089 MAP 383058..383622
KB3781 CM054583.1 IMGT000137 MAP 1043937..1044501
CM054559.1 IMGT000138 MAP 579906..580470
IGKV3-31 IGKV3-31*01 P (25) 2A Kamilah CM017848.1 IMGT000077 MAP 143111..143678 LT578338.1 IMGT000089 MAP 142652..143219
KB3781 CM054583.1 IMGT000137 MAP 143114..143681
IGKV3-31*02 P (25) 2A KB3781 CM054559.1 IMGT000138 MAP 143248..143815
IGKV3-34 IGKV3-34*01 P (26) 2A Kamilah CM017848.1 IMGT000077 MAP 117932..118480 LT578338.1 IMGT000089 MAP 117519..118067
KB3781 CM054583.1 IMGT000137 MAP 117938..118486
IGKV3-34*02 P (21) 2A KB3781 CM054559.1 IMGT000138 MAP 117730..118290
IGKV3-48 IGKV3-48*01 P (27) 2A Kamilah CM017848.1 IMGT000077 MAP 12769..13331
IGKV3-48*02 P (27) 2A LT578338.1 IMGT000089 MAP 12762..13322 KB3781 CM054583.1 IMGT000137 MAP 12760..13322
CM054559.1 IMGT000138 MAP 12769..13329
IGKV4 IGKV4-1 IGKV4-1*01 F 2A Kamilah CM017848.1 IMGT000077 MAP complement(853845..854457) KB3781 CM054583.1 IMGT000137 MAP complement(1334401..1335013)
IGKV4-1*02 P (28) 2A LT578338.1 IMGT000089 MAP complement(659137..659748)
IGKV4-1*03 F 2A KB3781 CM054559.1 IMGT000138 MAP complement(854516..855128)
IGKV5 IGKV5-2 IGKV5-2*01 F 2A Kamilah CM017848.1 IMGT000077 MAP complement(842142..842661) LT578338.1 IMGT000089 MAP complement(647448..647967)
KB3781 CM054583.1 IMGT000137 MAP complement(1322698..1323217)
CM054559.1 IMGT000138 MAP complement(842813..843332)
IGKV6 IGKV6-21 IGK6-21*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 560929..561510 LT578338.1 IMGT000089 MAP 364499..365080
KB3781 CM054583.1 IMGT000137 MAP 1025377..1025958
CM054559.1 IMGT000138 MAP 561309..561890
IGKV6-41 IGKV6-41*01 ORF (2) 2A Kamilah CM017848.1 IMGT000077 MAP 610604..611185 LT578338.1 IMGT000089 MAP 414187..414768
KB3781 CM054583.1 IMGT000137 MAP 1075063..1075644
CM054559.1 IMGT000138 MAP 611026..611607
IGKV7 IGKV7-3 IGKV7-3*01 F 2A Kamilah CM017848.1 IMGT000077 MAP 824244..824873 KB3781 CM054583.1 IMGT000137 MAP 1304800..1305429
IGKV7-3*02 F 2A LT578338.1 IMGT000089 MAP 629552..630181
IGKV7-3*03 P (21) 2A KB3781 CM054559.1 IMGT000138 MAP 824896..825526
MAP: mapped sequences.

IMGT notes:
  1. (1) frameshift in L-PART1, frameshift in L-PART2, frameshift in V-REGION: insertion of 1nt in CDR1-IMGT, deletion of 1nt in FR2-IMGT, 3nt in FR3-IMGT
  2. (2) noncanonical V-NONAMER: acaaaaatt instead of acacaaacc
  3. (3) STOP-CODON in V-REGION: position 41, 44, frameshift in V-REGION: insertion of 4nt in FR3-IMGT
  4. (4) frameshift in V-REGION: deletion of 2nt in FR1-IMGT, insertion of 4nt in CDR1-IMGT and 4nt in FR3-IMGT, no V-NONAMER
  5. (5) frameshift in V-REGION: deletion of 1nt in FR1-IMGT
  6. (6) noncanonical DONOR-SPLICE: ngc instead of ngt
  7. (7) no INIT-CODON in L-PART1: Thr instead of Met, frameshift in V-REGION: deletion of 1nt in FR1-IMGT
  8. (8) no INIT-CODON in L-PART1: Val instead of Met, STOP-CODON in V-REGION: position 16
  9. (9) no INIT-CODON in L-PART1: Val instead of Met, frameshift in V-REGION: deletion of 1 nt in FR1-IMGT
  10. (10) no INIT-CODON in L-PART1: Val instead of Met, STOP-CODON in V-REGION: position 44, frameshift in V-REGION: deletion of 1nt in FR3-IMGT
  11. (11) no INIT-CODON in L-PART1: Val instead of Met, frameshift in V-REGION: deletion of 1nt in FR1-IMGT, 1nt in FR3-IMGT
  12. (12) frameshift in V-REGION: deletion of 1nt in FR1-IMGT
  13. (13) frameshift in L-PART1 causing defectuous DONOR-SPLICE, frameshift in V-REGION: deletion on 1 nt in FR1-IMGT
  14. (14) no INIT-CODON in L-PART1: Ile instead of Met
  15. (15) no L-PART1, no L-PART2, truncated V-REGION in 5'
  16. (16) position of V-REGION
  17. (17) no INIT-CODON: Val instead of Met, STOP-CODON in V-REGION: position 41, frameshift in V-REGION: several insertions and deletions
  18. (18) frameshift in L-PART1, frameshift in V-REGION: deletion of 1nt in FR1-IMGT, 1nt in CDR1-IMGT, 1nt in FR3-IMGT
  19. (19) truncated V-REGION in 5' and 3', STOP-CODON in V-REGION: position 27 and 103, no V-RS
  20. (20) no L-PART1, no L-PART2, several STOP-CODON in V-REGION: position 12, 42, 44, 103, 109
  21. (21) frameshift in V-REGION: insertion of 1 nt in FR3-IMGT
  22. (22) frameshift in L-PART1 causing defectuous DONOR-SPLICE
  23. (23) noncanonical V-NONAMER: atagaaatc instead of acacaaacc
  24. (24) no INIT-CODON: Val instead of Met, STOP-CODON in V-REGION: position 38, frameshift in V-REGION: deletion of 1nt in FR2-IMGT
  25. (25) STOP-CODON in L-PART1, frameshift in V-REGION: deletion of 2nt in FR1-IMGT
  26. (26) no INIT-CODON: Thr instead of Met, no 1st-CYS: STOP-CODON instead of Cys, STOP-CODON in V-REGION:44,frameshift in V-REGION: deletion of 10 nt and deletion of 2 nt in FR3-IMGT, and insertion of 1 nt in FR3-IMGT
  27. (27) STOP-CODON in L-PART1, frameshift in V-REGION: deletion of 1nt in FR1-IMGT
  28. (28) frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  29. (29) frameshift in V-REGION: deletion of 1nt in CDR1-IMGT
  30. (30) frameshifts in V-REGION: several insertions and deletions, no V-NONAMER
  31. (31) no INIT-CODON: Val instead of Met
  32. (32) The nomenclature of the following genes; IGKV1-42, IGKV1-43 and IGKV6-41 is defined according to their high homology with the IGKVD1-42, IGKVD1-43 and IGKVD6-41 of Homo sapiens, respectively.
Created:
27/04/2022
Last updated:
22/09/2023
Authors:
Chahrazed Debbagh