IMGT Repertoire (IG and TR)


Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGLV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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Western lowland gorilla (Gorilla gorilla gorilla) pseudogenes assigned to clans


Pseudogenes which could not be assigned to subgroups with functional genes are designated by a roman number between parentheses, corresponding to the clans, followed by a dash and a number for the localization from 3' to 5' in the locus.

IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Isolate Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)		 Secondary accession numbers Isolate Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
IGLV(I) IGLV(I)-11-1 IGLV(I)-11-1*01 P (2) 22 Kamilah CM017869.1 IMGT000086 MAP 680530..680813 (1)
IGLV(I)-11-1*02 P (2) 22 LT578337.1 IMGT000094 MAP 718704..718987 (1) KB3781 CM054604.1 IMGT000152 MAP 668545..668828 (1)
IGLV(I)-11-1*03 P (2) 22 KB3781 CM054580.1 IMGT000153 MAP 708673..708957 (1)
IGLV(I)-20 IGLV(I)-20*01 P (3) 22 Kamilah CM017869.1 IMGT000086 MAP <619510..619795 (1)
IGLV(I)-20*02 P (3) 22 LT578337.1 IMGT000094 MAP <657688..657973 (1) KB3781 CM054604.1 IMGT000152 MAP <607509..607794 (1)
CM054580.1 IMGT000153 MAP <647606..647891 (1)
IGLV(I)-34-1 IGLV(I)-34-1*01 P (20) 22 LT578337.1 IMGT000094 MAP 495779..>496038 (1) KB3781 CM054604.1 IMGT000152 MAP 485837..>486133 (1)
CM054580.1 IMGT000153 MAP 485512..>485771 (1)
IGLV(I)-34-2 IGLV(I)-34-2*01 P (16) 22 Kamilah CM017869.1 IMGT000086 MAP 378242..378644 LT578337.1 IMGT000094 MAP 396525..396927
KB3781 CM054604.1 IMGT000152 MAP 386386..386788
CM054580.1 IMGT000153 MAP 385934..386336
IGLV(I)-42 IGLV(I)-42*01 P (5) 22 Kamilah CM017869.1 IMGT000086 MAP 356725..357223 LT578337.1 IMGT000094 MAP 375009..375507
KB3781 CM054604.1 IMGT000152 MAP 364869..365367
KB3781 CM054580.1 IMGT000153 MAP 364408..364906
IGLV(I)-45-1 IGLV(I)-45-1*01 P (6) 22 Kamilah CM017869.1 IMGT000086 MAP 328392..328676 (1)
IGLV(I)-45-1*02 P (6) 22 LT578337.1 IMGT000094 MAP 346436..346720 (1) KB3781 CM054604.1 IMGT000152 MAP 335955..336239 (1)
IGLV(I)-45-1*03 P (6) 22 KB3781 CM054580.1 IMGT000153 MAP 335696..335980 (1)
IGLV(I)-48-1 IGLV(I)-48-1*01 P (7) 22 Kamilah CM017869.1 IMGT000086 MAP 299400..299701 (1) LT578337.1 IMGT000094 MAP 317489..317790 (1)
KB3781 CM054604.1 IMGT000152 MAP 307013..307314 (1)
CM054580.1 IMGT000153 MAP 306700..307001 (1)
IGLV(I)-56 IGLV(I)-56*01 P (8) 22 Kamilah CM017869.1 IMGT000086 MAP 148566..>148861 (1) LT578337.1 IMGT000094 MAP 148515..>148810 (1)
KB3781 CM054580.1 IMGT000153 MAP 155339..>155634 (1)
IGLV(I)-56*02 P (8) 22 KB3781 CM054604.1 IMGT000152 MAP 155376..>155671 (1)
IGLV(I)-68 IGLV(I)-68*01 P (9) 22 Kamilah CM017869.1 IMGT000086 MAP 16613..16905 (1) LT578337.1 IMGT000094 MAP 16613..16905 (1)
KB3781 CM054604.1 IMGT000152 MAP 23394..23686 (1)
CM054580.1 IMGT000153 MAP 23408..23700 (1)
IGLV(I)-70 IGLV(I)-70*01 P (4) 22 Kamilah CM017869.1 IMGT000086 MAP 9816..10307 LT578337.1 IMGT000094 MAP 9816..10307
KB3781 CM054604.1 IMGT000152 MAP 16597..17088
CM054580.1 IMGT000153 MAP 16601..17092
IGLV(I)-70-1 IGLV(I)-70-1*01 P (3) 22 Kamilah CM017869.1 IMGT000086 MAP <3211..3387 (1) LT578337.1 IMGT000094 MAP <3220..3396 (1)
KB3781 CM054604.1 IMGT000152 MAP <10001..10177 (1)
CM054580.1 IMGT000153 MAP <10001..10177 (1)
IGLV(II) IGLV(II)-9-1 IGLV(II)-9-1*01 P (2) 22 Kamilah CM017869.1 IMGT000086 MAP 720839..721134 (1) LT578337.1 IMGT000094 MAP 758991..759286 (1)
KB3781 CM054604.1 IMGT000152 MAP 708864..709159 (1)
CM054580.1 IMGT000153 MAP 748964..749259 (1)
IGLV(II)-15-1 IGLV(II)-15-1*01 P (10) 22 Kamilah CM017869.1 IMGT000086 MAP 656751..>657034 (1) LT578337.1 IMGT000094 MAP 694932..>695215 (1)
KB3781 CM054604.1 IMGT000152 MAP 644768..>645051 (1)
CM054580.1 IMGT000153 MAP 684907..>685190 (1)
IGLV(II)-24-1 IGLV(II)-24-1*01 P (11) 22 Kamilah CM017869.1 IMGT000086 MAP 594087..>594375 (1) LT578337.1 IMGT000094 MAP 632271..>632559 (1)
KB3781 CM054604.1 IMGT000152 MAP 582078..>582366 (1)
CM054580.1 IMGT000153 MAP 622187..>622475 (1)
IGLV(II)-24-5 IGLV(II)-24-5*01 P (11) 22 LT578337.1 IMGT000094 MAP 620904..>621194 (1) KB3781 CM054580.1 IMGT000153 MAP 610795..>611085 (1)
IGLV(III) IGLV(III)-59-1 IGLV(III)-59-1*01 P (4) 22 Kamilah CM017869.1 IMGT000086 MAP 118063..118528 KB3781 CM054580.1 IMGT000153 MAP 124868..125333
IGLV(III)-59-1*02 P (4) 22 LT578337.1 IMGT000094 MAP 118027..118492
IGLV(III)-59-1*03 P (4) 22 KB3781 CM054604.1 IMGT000152 MAP 124866..125332
IGLV(III)-60-1 IGLV(III)-60-1*01 P (12) 22 Kamilah CM017869.1 IMGT000086 MAP 107096..107544
IGLV(III)-60-1*02 P (12) 22 LT578337.1 IMGT000094 MAP 107067..107512
IGLV(III)-60-1*03 P (12) 22 KB3781 CM054604.1 IMGT000152 MAP 113885..114343
IGLV(III)-60-1*04 P (12) 22 KB3781 CM054580.1 IMGT000153 MAP 113907..114368
IGLV(IV) IGLV(IV)-53 IGLV(IV)-53*01 P (6) 22 Kamilah CM017869.1 IMGT000086 MAP 169575..169887 (1) KB3781 CM054580.1 IMGT000153 MAP 176332..176644 (1)
IGLV(IV)-53*02 P (6) 22 LT578337.1 IMGT000094 MAP 169514..169826 (1) KB3781 CM054604.1 IMGT000152 MAP 176369..176681 (1)
IGLV(IV)-55-1 IGLV(IV)-55-1*01 P (13) 22 Kamilah CM017869.1 IMGT000086 MAP <148866..149166 (1) LT578337.1 IMGT000094 MAP <148815..149115 (1)
KB3781 CM054604.1 IMGT000152 MAP <155676..155976 (1)
IGLV(IV)-55-1*02 P (13) 22 KB3781 CM054580.1 IMGT000153 MAP <155639..155939 (1)
IGLV(IV)-59 IGLV(IV)-59*01 P (14) 22 Kamilah CM017869.1 IMGT000086 MAP 129021..129324 (1) LT578337.1 IMGT000094 MAP 128987..129290 (1)
IGLV(IV)-59*02 P (14) 22 KB3781 CM054604.1 IMGT000152 MAP 135831..136134 (1) KB3781 CM054580.1 IMGT000153 MAP 135836..136139 (1)
IGLV(IV)-61-1 IGLV(IV)-61-1*01 P (13) 22 Kamilah CM017869.1 IMGT000086 MAP <35070..35251 (1) LT578337.1 IMGT000094 MAP <35071..35252 (1)
KB3781 CM054604.1 IMGT000152 MAP <41850..42031 (1)
CM054580.1 IMGT000153 MAP <41874..42055 (1)
IGLV(V) IGLV(V)-58 IGLV(V)-58*01 P (4) 22 Kamilah CM017869.1 IMGT000086 MAP 132178..132731 KB3781 CM054604.1 IMGT000152 MAP 138987..139540
IGLV(V)-58*02 P (4) 22 LT578337.1 IMGT000094 MAP 132140..132692
IGLV(V)-58*03 P (4) 22 KB3781 CM054580.1 IMGT000153 MAP 138996..139549
IGLV(V)-61-1 IGLV(V)-61-1*01 P (7) 22 Kamilah CM017869.1 IMGT000086 MAP 44866..45279 LT578337.1 IMGT000094 MAP 44867..45280 (1)
KB3781 CM054604.1 IMGT000152 MAP 51651..52064 (1)
CM054580.1 IMGT000153 MAP 51676..52089 (1)
IGLV(VI) IGLV(VI)-16-1 IGLV(VI)-16-1*01 P (17) 22 Kamilah CM017869.1 IMGT000086 MAP 650441..>650544 (1) KB3781 CM054580.1 IMGT000153 MAP 678551..>678654 (1)
IGLV(VI)-16-1*02 P (17) 22 LT578337.1 IMGT000094 MAP 688622..>688725 (1)
IGLV(VI)-16-1*03 P (17) 22 KB3781 CM054604.1 IMGT000152 MAP 638453..>638556 (1)
IGLV(VI)-22-1 IGLV(VI)-22-1*01 P (18) 22 Kamilah CM017869.1 IMGT000086 MAP 605104..>605396 (1) LT578337.1 IMGT000094 MAP 643285..>643577 (1)
KB3781 CM054604.1 IMGT000152 MAP 593095..>593387 (1)
CM054580.1 IMGT000153 MAP 633204..>633496 (1)
IGLV(VI)-24-3 IGLV(VI)-24-3*01 P (19) 22 LT578337.1 IMGT000094 MAP 625802..>626094 (1)
IGLV(VI)-24-3*02 P (15) 22 KB3781 CM054604.1 IMGT000152 MAP <575795..>575915 (1)
IGLV(VI)-24-3*03 P (19) 22 KB3781 CM054580.1 IMGT000153 MAP 615694..>615986 (1)
IGLV(VI)-25-1 IGLV(VI)-25-1*01 P (19) 22 Kamilah CM017869.1 IMGT000086 MAP 583555..>583839 (1)
IGLV(VI)-25-1*02 P (19) 22 LT578337.1 IMGT000094 MAP 610492..>610780 (1)
IGLV(VI)-25-1*03 P (19) 22 KB3781 CM054580.1 IMGT000153 MAP 600322..>600610 (1)
IGLV(VII) IGLV(VII)-59-1 IGLV(VII)-59-1*01 P (10) 22 Kamilah CM017869.1 IMGT000086 MAP 115955..>116153 (1) LT578337.1 IMGT000094 MAP 115920..>116118 (1)
KB3781 CM054604.1 IMGT000152 MAP 122758..>122956 (1)
CM054580.1 IMGT000153 MAP 122762..>122960 (1)
IGLV(VII)-68-1 IGLV(VII)-68-1*01 P (11) 22 Kamilah CM017869.1 IMGT000086 MAP 16170..>16460 (1) LT578337.1 IMGT000094 MAP 16170..>16460 (1)
KB3781 CM054604.1 IMGT000152 MAP 22951..>23241 (1)
CM054580.1 IMGT000153 MAP 22965..>23255 (1)
MAP: mapped sequences.

IMGT notes:
  1. (1) position of V-REGION
  2. (2) no L-PART1, frameshift in L-PART2, truncated pseudogene not assigned to subgroups with functional genes
  3. (3) no L-PART1, no L-PART2, truncated pseudogene not assigned to subgroups with functional genes
  4. (4) truncated pseudogene not assigned to subgroups with functional genes
  5. (5) frameshift in L-PART1 causing defectuous DONOR-SPLICE, truncated pseudogene not assigned to subgroups with functional genes
  6. (6) truncated pseudogene not assigned to subgroups with functional genes, no V-NONAMER
  7. (7) no L-PART1, truncated pseudogene not assigned to subgroups with functional genes
  8. (8) no DONOR-SPLICE,frameshift in L-PART2, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
  9. (9) no L-PART1, STOP-CODON in L-PART2, truncated pseudogene not assigned to subgroups with functional genes
  10. (10) no L-PART1, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
  11. (11) no L-PART1, frameshift in L-PART2, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
  12. (12) no INIT-CODON: Ile instead of Met, no ACCEPTOR-SPLICE, truncated pseudogene not assigned to subgroups with functional genes
  13. (13) no L-PART1, no L-PART2, truncated pseudogene not assigned to subgroups with functional genes, no V-NONAMER
  14. (14) frameshift in L-PART1, no DONOR-SPLICE, truncated pseudogene not assigned to subgroups with functional genes, no V-NONAMER
  15. (15) no L-PART1, no L-PART2, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
  16. (16) frameshift in L-PART2, truncated pseudogene not assigned to subgroups with functional genes
  17. (17) frameshift in L-PART1 causing defectuous DONOR-SPLICE, truncated pseudogene not assigned to subgroups with functional genes, insertion of a repeat unit sequence (67nts) in V-REGION, no V-RS
  18. (18) frameshift in L-PART1 causing defectuous DONOR-SPLICE, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
  19. (19) frameshift in L-PART1, no DONOR-SPLICE, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
  20. (20) STOP-CODON in L-PART1, frameshift in L-PART2, truncated pseudogene not assigned to subgroups with functional genes, no V-RS
Created:
26/09/2022
Last updated:
22/09/2023
Authors:
Chahrazed Debbagh