IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

cDNAs have been included in this table as they are informative for the gene content of the corresponding genomic cassettes.

Cassette		Clone name	Gene name	Accession numbers
Cassette
1	#c	LC1-7	IGIV1S1	AF246193
			IGIJ3S1
			IGIC3S1
2	#c	LC1-1	IGIV1S2	AF246187
3	#c	LC1-8	IGIV1S3	AF246185
			IGIJ1S1
			IGIC1S1
4	#c	LC1-17	IGIV1S4	AF246188
5	#c	LC1-14	IGIV1S5	AF246184
6	#c	G4275	IGIV1S6	AF246190
7	#c	LC1-15	IGIV1S7	AF246192
8	#c	LC1-4	IGIV1S8	AF246189
9	#c	G4276	IGIV1S9	AF246191
10	c(st)	NLC3	IGIV2S1	AF246162
			IGIJ2S1
			IGIC2S1
11	#c	NLC101A	IGIV2S2	AF246179
12	#c	ZFLC-10	IGIV2S3	AF246182
13	#c	NLC106V	IGIV2S4	AF246180
14	c	NLC106C	IGIC2S2	AF246181

#c: rearranged cDNA.
c: cDNA sequence.
(st): sterile transcript.

See also (IMGT Scientific chart):

Created:: 11/06/2003
Last updated:: 22/09/2023
Authors:: Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table - Cassette gene content: zebrafish (Danio rerio) IGI