IMGT Repertoire (IG and TR)

Gene table: zebrafish (Danio rerio) IGIV

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

The Zebrafish (Danio rerio) IGI variable genes and alleles find on cDNA and not assigned to germline have a temporary designation based on the IMGT gene name nomenclature rules. They are designated by the locus three letter root, followed by the letter V, the subgroup number, the letter S and a number

Positions in the sequence: limits from the first nucleotide of V-REGION to the last nucleotide.

IMGT subgroup IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Strain Clone names Accession numbers Positions in the sequence Secondary accession numbers Strain Clone names Accession numbers Positions in the sequence
IGIV1 IGIV1-1 IGIV1-1*01 ORF DKEY-158E13 BX571825 [1] (1) 158664-159009
IGIV1-2 IGIV1-2*01 F DKEY-158E13 BX571825 [1] 154359-154695
IGIV2 IGIV2 IGIV2*01 P DKEY-158E13 BX571825 [1] (2) 153276-153578
IGIV3 IGIV3-1 IGIV3-1*01 F DKEY-158E13 BX571825 [1] 149229-149517
IGIV3-2 IGIV3-2*01 P DKEY-158E13 BX571825 [1] (3) 87021-87299
IGIV3-3 IGIV3-3*01 F DKEY-158E13 BX571825 [1] 80755-81043
IGIV4 IGIV4-1 IGIV4-1*01 ORF DKEY-158E13 BX571825 [1] (4) 137143-137470
IGIV4-2 IGIV4-2*01 P DKEY-158E13 BX571825 [1] (5) 72499-72832
IGIV6 IGIV6S1 IGIV6S1*01 (F) LC1_8 AF246185 [2] #c 61-375
IGIV6S2 IGIV6S2*01 (F) EF222424 [3] #c 2-290
IGIV7 IGIV7S1 IGIV7S1*01 (F) NLC3 AF246162 [2] #c 854-1157
IGIV7S2 IGIV7S2*01 (F) EF222430 [3] #c 17-325
IGIV8 IGIV8S1 IGIV8S1*01 (F) LC1-7 AF246193 [2] #c 61-375

#c: rearranged cDNA.

IMGT notes:
  1. (1) ORF because of a very short L-PART1
  2. (2) pseudo because of several STOP-CODON in V-REGION, a very long L-PART2 and no L-PART1
  3. (3) pseudo because of frameshift in V-REGION and no DONOR-SPLICE
  4. (4) ORF because of very long L-PART2 and CDR3-IMGT
  5. (5) pseudo because of frameshifts in V-REGION and a very long CDR3-IMGT
IMGT references:
  1. [1] Marianes A.E. et al., Immunology., 132, 240-255 (2011). PMID:21070232
  2. [2] Haire R.N. et al., Immunogenetics., 51, 915-923 (2000). PMID:11003385
  3. [3] Zimmerman A.M. et al., Dev. Comp. Immunol., 32, 421-434 (2008). PMID:18022691
Last updated:
Author: Nathalie Bosc, Amandine Lacan