IMGT Repertoire (IG and TR)

Gene table: bovine (Bos taurus) TRBC

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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This article was also used for annotation:
Tanaka, A et al. “Sequence and diversity of bovine T-cell receptor beta-chain genes.” Immunogenetics vol. 32,4 (1990): 263-71. PMID: 1700762

IMGT gene name IMGT allele name Fct Chromosomal
T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Exons Accession numbers Positions in the sequence Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
TRBC1 TRBC1*01 F 4 Hereford CM008171.2 EX1 IMGT000084 MAP 605603..605992
EX2 IMGT000084 MAP 606660..606677
EX3 IMGT000084 MAP 606834..606940
EX4 IMGT000084 MAP 607266..607283
TRBC1*02 F 4 EX1 AF453325 22605..22994
EX2 AF453325 23664..23681
EX3 AF453325 23838..23944
EX4 AF453325 24269..24286
TRBC2 TRBC2*01 F 4 Hereford CM008171.2 EX1 IMGT000084 MAP 624260..624649
EX2 IMGT000084 MAP 625326..625343
EX3 IMGT000084 MAP 625498..625604
EX4 IMGT000084 MAP 625878..625895
TRBC2*02 F 4 EX1 AF453325 41269..41658
EX2 AF453325 42335..42352
EX3 AF453325 42507..42613
EX4 AF453325 42887..42904
TRBC3 TRBC3*01 F 4 Hereford CM008171.2 EX1 IMGT000084 MAP 615431..615820
EX2 IMGT000084 MAP 616230..616247
EX3 IMGT000084 MAP 616409..616515
EX4 IMGT000084 MAP 616842..616859
TRBC3*02 F 4 EX1 AF453325 32432..32821
EX2 AF453325 33230..33247
EX3 AF453325 33409..33515
EX4 AF453325 33842..33859

MAP: Mapped reference sequences.

IMGT notes:
IMGT references:
  1. [1] Tanaka A. et al., Immunogenetics, 32, 263-271 (1990). PMID:1700762
Last updated:
Alexandre Albani, Gérard Lefranc, Sofia Kossida, Marie-Paule Lefranc