IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

This article was also used for annotation:
Tanaka, A et al. “Sequence and diversity of bovine T-cell receptor beta-chain genes.” Immunogenetics vol. 32,4 (1990): 263-71. PMID: 1700762

IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization	T	Pr	Breed	Clone names	Exons	Accession numbers	Positions in the sequence	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence
	TRBC1	TRBC1*01	F	4					Hereford	CM008171.2	EX1	IMGT000084	MAP	605603..605992
											EX2	IMGT000084	MAP	606660..606677
											EX3	IMGT000084	MAP	606834..606940
											EX4	IMGT000084	MAP	607266..607283
		TRBC1*02	F	4							EX1	AF453325		22605..22994
											EX2	AF453325		23664..23681
											EX3	AF453325		23838..23944
											EX4	AF453325		24269..24286
	TRBC2	TRBC2*01	F	4					Hereford	CM008171.2	EX1	IMGT000084	MAP	624260..624649
											EX2	IMGT000084	MAP	625326..625343
											EX3	IMGT000084	MAP	625498..625604
											EX4	IMGT000084	MAP	625878..625895
		TRBC2*02	F	4							EX1	AF453325		41269..41658
											EX2	AF453325		42335..42352
											EX3	AF453325		42507..42613
											EX4	AF453325		42887..42904
	TRBC3	TRBC3*01	F	4					Hereford	CM008171.2	EX1	IMGT000084	MAP	615431..615820
											EX2	IMGT000084	MAP	616230..616247
											EX3	IMGT000084	MAP	616409..616515
											EX4	IMGT000084	MAP	616842..616859
		TRBC3*02	F	4							EX1	AF453325		32432..32821
											EX2	AF453325		33230..33247
											EX3	AF453325		33409..33515
											EX4	AF453325		33842..33859

MAP: Mapped reference sequences.

IMGT notes:

IMGT references:

[1] Tanaka A. et al., Immunogenetics, 32, 263-271 (1990). PMID:1700762

More information:

See also (IMGT Scientific chart):

Created:: 01/12/2021
Last updated:: 22/09/2023
Authors:: Alexandre Albani, Gérard Lefranc, Sofia Kossida, Marie-Paule Lefranc

IMGT Repertoire (IG and TR)

Gene table: bovine (Bos taurus) TRBC