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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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This article was also used for annotation:
Tanaka, A et al. “Sequence and diversity of bovine T-cell receptor beta-chain genes.” Immunogenetics vol. 32,4 (1990): 263-71. PMID: 1700762

IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)		 Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(J-GENE-UNIT)
TRBJ1 TRBJ1-1 TRBJ1-1*01 F 4 + + Hereford CM008171.2 IMGT000084 MAP 600685..600760
TRBJ1-2 TRBJ1-2*01 F 4 Hereford CM008171.2 IMGT000084 MAP 600819..600890
TRBJ1-3 TRBJ1-3*01 ORF (5) 4 Hereford CM008171.2 IMGT000084 MAP 601109..601199
TRBJ1-4 TRBJ1-4*01 F 4 Hereford CM008171.2 IMGT000084 MAP 601691..601767
TRBJ1-5 TRBJ1-5*01 ORF (3) 4 Hereford CM008171.2 IMGT000084 MAP 601965..602042
TRBJ1-6 TRBJ1-6*01 ORF (4) 4 Hereford CM008171.2 IMGT000084 MAP 602760..602840
TRBJ2 TRBJ2-1 TRBJ2-1*01 F 4 Hereford CM008171.2 IMGT000084 MAP 620519..620596
TRBJ2-1*02 F AF453325 37519..37596
TRBJ2-2 TRBJ2-2*01 F 4 + + Hereford CM008171.2 IMGT000084 MAP 620714..620792 AF453325 37714..37792
TRBJ2-3 TRBJ2-3*01 F 4 + + Hereford CM008171.2 IMGT000084 MAP 620934..621010
TRBJ2-3*02 F + + AF453325 37934..38010
TRBJ2-4 TRBJ2-4*01 F 4 + + Hereford CM008171.2 IMGT000084 MAP 621081..621157 AF453325 38081..38157
TRBJ2-5 TRBJ2-5*01 F 4 Hereford CM008171.2 IMGT000084 MAP 621200..621273 AF453325 38199..38272
TRBJ2-6 TRBJ2-6*01 F 4 + + Hereford CM008171.2 IMGT000084 MAP 621296..621376
TRBJ2-6*02 F AF453325 38295..38374
TRBJ2-7 TRBJ2-7*01 F (2) 4 + + Hereford CM008171.2 IMGT000084 MAP 621528..621602 AF453325 38526..38600
TRBJ3 TRBJ3-1 TRBJ3-1*01 F 4 Hereford CM008171.2 IMGT000084 MAP 610804..610881 AF453325 27809..27886
TRBJ3-2 TRBJ3-2*01 F 4 Hereford CM008171.2 IMGT000084 MAP 611000..611078 AF453325 28005..28083
TRBJ3-3 TRBJ3-3*01 F 4 Hereford CM008171.2 IMGT000084 MAP 611218..611294 AF453325 28222..28298
TRBJ3-4 TRBJ3-4*01 F 4 Hereford CM008171.2 IMGT000084 MAP 611336..611411 AF453325 28340..28415
TRBJ3-5 TRBJ3-5*01 F 4 + + Hereford CM008171.2 IMGT000084 MAP 611622..611696 AF453325 28625..28699
TRBJ3-6 TRBJ3-6*01 P (6) 4 Hereford CM008171.2 IMGT000084 MAP 611447..611505 (1) AF453325 28451..28509 (1)

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) positions of J-REGION
  2. (2) noncanonical J-HEPTAMER: ttccgtg instead of ggctgtg, however this J-GENE has been found rearranged
  3. (3) noncanonical J-NONAMER: ggatttgcc instead of ggtttttgt
  4. (4) noncanonical J-NONAMER: ggttttgcc instead of ggtttttgt
  5. (5) noncanonical J-NONAMER: ggttttgaa instead of ggtttttgt, noncanonical J-HEPTAMER: gtcttgg instead of ggctgtg
  6. (6) no J-RS
IMGT references:
  1. [1] Tanaka A. et al., Immunogenetics, 32, 263-271 (1990). PMID:1700762
Created:
01/12/2021
Last updated:
22/09/2023
Authors:
Alexandre Albani, Gérard Lefranc, Sofia Kossida, Marie-Paule Lefranc