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"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT subgroup IMGT gene name IMGT allele name Fct Chromosomal
localization		 R T Pr IMGT/LIGM-DB locus reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)		 Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence
(L-V-GENE-UNIT)
TRDV1 TRDV1 TRDV1*01 P (1) B3 Abyssinian CM001383.3 IMGT000045 MAP 350748..351349
TRDV2 TRDV2 TRDV2*01 P (2) (7) B3 Abyssinian TRDV2-2, CM001383.3 IMGT000045 MAP 678004..>678170 (3)
TRDV3 TRDV3 TRDV3*01 F B3 Abyssinian CM001383.3 IMGT000045 MAP complement(733460..734323)
TRDV4 TRDV4 TRDV4*01 ORF (4) B3 Abyssinian CM001383.3 IMGT000045 MAP 656377..656941
TRDV5 TRDV5-1 TRDV5-1*01 F B3 Abyssinian CM001383.3 IMGT000045 MAP 536842..537413
TRDV5-2 TRDV5-2*01 F B3 Abyssinian CM001383.3 IMGT000045 MAP 551603..552178
TRDV5-3 TRDV5-3*01 F B3 Abyssinian CM001383.3 IMGT000045 MAP 564231..564800
TRDV5-4 TRDV5-4*01 P (5) B3 Abyssinian CM001383.3 IMGT000045 MAP 587032..587600
TRDV5-5 TRDV5-5*01 F B3 Abyssinian CM001383.3 IMGT000045 MAP 602488..603191
TRDV5-6 TRDV5-6*01 ORF (6) B3 Abyssinian CM001383.3 IMGT000045 MAP 613341..613913

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) frameshift in V-REGION: several insertions and deletions
  2. (2) frameshift in V-REGION: several insertions and deletions and no V-RS
  3. (3) position of V-REGION
  4. (4) noncanonical V-NONAMER: tcagaaccc instead of acaaaaacc
  5. (5) frameshift in V-REGION: deletion of 1 nt in FR3-IMGT
  6. (6) no CONSERVED-TRP: Phe instead of Trp
  7. (7) Felis catus TRDV2 gene is the unique representative of the Felcat TRDV2 subgroup in IMGT000045 (CM001383.3) and its name replaces old TRDV2-2 (ORF) name (V. Nguefack Ngoune and M-P. Lefranc, 23/09/2020).
Created:
29/05/2019
Last updated:
22/09/2023
Authors:
Viviane Nguefack Ngoune